View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4822-Insertion-9 (Length: 401)

Name: NF4822-Insertion-9
Description: NF4822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4822-Insertion-9
NF4822-Insertion-9
[»] chr4 (14 HSPs)
chr4 (8-401)||(46302939-46303331)
chr4 (42-123)||(46021982-46022063)
chr4 (318-384)||(46260219-46260285)
chr4 (132-229)||(46028656-46028750)
chr4 (126-207)||(46302622-46302699)
chr4 (165-207)||(46028755-46028797)
chr4 (165-207)||(46259774-46259816)
chr4 (156-229)||(46259841-46259915)
chr4 (256-361)||(46302825-46302930)
chr4 (289-327)||(46306664-46306702)
chr4 (22-101)||(46428899-46428972)
chr4 (156-229)||(46028452-46028524)
chr4 (156-229)||(46260048-46260120)
chr4 (156-229)||(46302729-46302806)
[»] chr8 (4 HSPs)
chr8 (293-350)||(4524663-4524720)
chr8 (60-93)||(5004195-5004228)
chr8 (60-93)||(5019205-5019238)
chr8 (60-93)||(23770794-23770827)


Alignment Details
Target: chr4 (Bit Score: 374; Significance: 0; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 8 - 401
Target Start/End: Original strand, 46302939 - 46303331
Alignment:
Q  8 tcttccaagttccaacttatttcatcaactcatttagccacatcactatcaatatcagcctccaactcttccttctcctgtaaagcattctcgcgaaact 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  46302939 tcttccaagttccaacttatttcatcaactcatttagccacatcactatcaatatcagcctccaactcttccttctcctgtaaagcattatcgcgaaact 46303038  T
Q  108 gttcatcatccgaatctgaatcggcagtgatatggtgcaagaagatttattagaataattgggatgcaaatcataatctagtttatattatagaagatta 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46303039 gttcatcatccgaatctgaatcggcagtgatatggtgcaagaagattgattagaataattgggatgcaaatcataatctagtttatattatagaagatta 46303138  T
Q  208 ctgaaaacaaacatgcagaaagtacagttttatacaggaaggagcattctctggccaacaacataagtcaggaataacataaacccactaacacacatga 307  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  46303139 atgaaaacaaacatgcagaaagtacagttttatacaggaaggagcattctctggccaacaacataagtcaggaataacat-aacccactaacacacatga 46303237  T
Q  308 ttccaacctataaatgaaagtactcaattaactgctgctatattaataactactcttattgatattctttctcttcttctcagccatcccaatc 401  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46303238 ttccaacctataaatgaaagtactcaattaactgctgctatattaataactactcttattgatattctttctcttcttctcagccatcccaatc 46303331  T

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Target: chr4; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 42 - 123
Target Start/End: Complemental strand, 46022063 - 46021982
Alignment:
Q  42 tagccacatcactatcaatatcagcctccaactcttccttctcctgtaaagcattctcgcgaaactgttcatcatccgaatc 123  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||    
T  46022063 tagccacatcactatcaatatcagcctccaactcttccttctccggtaaagcattctcacgaaactgttcatcatccgaatc 46021982  T

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Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 318 - 384
Target Start/End: Original strand, 46260219 - 46260285
Alignment:
Q  318 taaatgaaagtactcaattaactgctgctatattaataactactcttattgatattctttctcttct 384  Q
    ||||||| ||| ||| ||||||||||||||||||||||||||||||||||| | |||||||||||||    
T  46260219 taaatgagagtcctcgattaactgctgctatattaataactactcttattgctcttctttctcttct 46260285  T

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Target: chr4; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 132 - 229
Target Start/End: Complemental strand, 46028750 - 46028656
Alignment:
Q  132 cagtgatatggtgcaagaagatttattagaataattgggatgcaaatcataatc-tagtttatattatagaagattactgaaaacaaacatgcagaaag 229  Q
    |||||||||||| ||||||||||    ||||||||||||||||||||||||||| |||||||||||| ||||||||| | | || ||||||||| ||||    
T  46028750 cagtgatatggttcaagaagatt----agaataattgggatgcaaatcataatcttagtttatattacagaagattattaataataaacatgcataaag 46028656  T

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Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 126 - 207
Target Start/End: Original strand, 46302622 - 46302699
Alignment:
Q  126 aatcggcagtgatatggtgcaagaagatttattagaataattgggatgcaaatcataatctagtttatattatagaagatta 207  Q
    ||||| |||||||||||| ||||||||||    ||||||| ||||||| |||||||||| |||||||||||| |||||||||    
T  46302622 aatcgacagtgatatggttcaagaagatt----agaataactgggatggaaatcataatatagtttatattacagaagatta 46302699  T

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Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 165 - 207
Target Start/End: Complemental strand, 46028797 - 46028755
Alignment:
Q  165 attgggatgcaaatcataatctagtttatattatagaagatta 207  Q
    ||||||||||||||||||||||||||||||||| |||||||||    
T  46028797 attgggatgcaaatcataatctagtttatattagagaagatta 46028755  T

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Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 165 - 207
Target Start/End: Original strand, 46259774 - 46259816
Alignment:
Q  165 attgggatgcaaatcataatctagtttatattatagaagatta 207  Q
    ||||||||||||||||||||||||||||||||| |||||||||    
T  46259774 attgggatgcaaatcataatctagtttatattagagaagatta 46259816  T

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Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 156 - 229
Target Start/End: Original strand, 46259841 - 46259915
Alignment:
Q  156 attagaataattgggatgcaaatcataatc-tagtttatattatagaagattactgaaaacaaacatgcagaaag 229  Q
    |||||||| ||||||||||||||||||||| |||||||||||| ||||||||| | | || ||||||||| ||||    
T  46259841 attagaatgattgggatgcaaatcataatcttagtttatattacagaagattattaataataaacatgcataaag 46259915  T

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Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 256 - 361
Target Start/End: Original strand, 46302825 - 46302930
Alignment:
Q  256 ctctggccaacaacataagtcaggaataacataaacccactaacacacatgattccaacctataaatgaaa-gtactcaattaactgctgctatattaat 354  Q
    |||| ||||||||||||| | | | ||||||||| |||||||||||||||||||||||| ||||| | ||| |||||||| ||| ||||||  ||||||     
T  46302825 ctctagccaacaacataaattacgcataacataa-cccactaacacacatgattccaacttataatttaaaggtactcaagtaattgctgccttattaaa 46302923  T
Q  355 aactact 361  Q
    |||||||    
T  46302924 aactact 46302930  T

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Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 289 - 327
Target Start/End: Original strand, 46306664 - 46306702
Alignment:
Q  289 aacccactaacacacatgattccaacctataaatgaaag 327  Q
    |||||||||||||||||||||||||||||||||||||||    
T  46306664 aacccactaacacacatgattccaacctataaatgaaag 46306702  T

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Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 22 - 101
Target Start/End: Complemental strand, 46428972 - 46428899
Alignment:
Q  22 acttatttcatcaactcatttagccacatcactatcaatatcagcctccaactcttccttctcctgtaaagcattctcgc 101  Q
    ||||||||||||||||| | |||||||||||| ||||      ||||||||||||| ||||||| |||||||||||||||    
T  46428972 acttatttcatcaactcgtgtagccacatcaccatca------gcctccaactctttcttctccagtaaagcattctcgc 46428899  T

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Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 156 - 229
Target Start/End: Complemental strand, 46028524 - 46028452
Alignment:
Q  156 attagaataattgggatgcaaatcataatctagtttatattatagaagattactgaaaacaaacatgcagaaag 229  Q
    ||||||||||||||||||||||  ||||||||| |||||||| ||||  ||| ||| |||||||||||| ||||    
T  46028524 attagaataattgggatgcaaactataatctag-ttatattacagaaacttagtgataacaaacatgcataaag 46028452  T

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Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 156 - 229
Target Start/End: Original strand, 46260048 - 46260120
Alignment:
Q  156 attagaataattgggatgcaaatcataatctagtttatattatagaagattactgaaaacaaacatgcagaaag 229  Q
    ||||||||||||||||||||||  ||||||||| |||||||| ||||  ||| ||| |||||||||||| ||||    
T  46260048 attagaataattgggatgcaaactataatctag-ttatattacagaaacttagtgataacaaacatgcataaag 46260120  T

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Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 156 - 229
Target Start/End: Original strand, 46302729 - 46302806
Alignment:
Q  156 attagaataattgggatgcaaatcataatctagt---ttatattatagaagattactgaa-aacaaacatgcagaaag 229  Q
    |||| ||||||| |||||||||||||||||||||   |||||||| ||||||||| | || ||| |||||||||||||    
T  46302729 attaaaataattaggatgcaaatcataatctagtttattatattacagaagattattaaataaccaacatgcagaaag 46302806  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 293 - 350
Target Start/End: Original strand, 4524663 - 4524720
Alignment:
Q  293 cactaacacacatgattccaacctataaatgaaagtactcaattaactgctgctatat 350  Q
    |||||||||||||||||||||||||||| ||||||||||  | |||||||| ||||||    
T  4524663 cactaacacacatgattccaacctataattgaaagtacttcagtaactgctcctatat 4524720  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 93
Target Start/End: Complemental strand, 5004228 - 5004195
Alignment:
Q  60 tatcagcctccaactcttccttctcctgtaaagc 93  Q
    |||||||||||||||||||||||| |||||||||    
T  5004228 tatcagcctccaactcttccttcttctgtaaagc 5004195  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 93
Target Start/End: Complemental strand, 5019238 - 5019205
Alignment:
Q  60 tatcagcctccaactcttccttctcctgtaaagc 93  Q
    |||||||||||||||||||||||| |||||||||    
T  5019238 tatcagcctccaactcttccttcttctgtaaagc 5019205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 93
Target Start/End: Complemental strand, 23770827 - 23770794
Alignment:
Q  60 tatcagcctccaactcttccttctcctgtaaagc 93  Q
    |||||||||||||||||||||||| |||||||||    
T  23770827 tatcagcctccaactcttccttcttctgtaaagc 23770794  T

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