View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4822_high_2 (Length: 419)
Name: NF4822_high_2
Description: NF4822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4822_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 19 - 410
Target Start/End: Complemental strand, 6565645 - 6565254
Alignment:
| Q |
19 |
actttcgatgtctatagatatcaaagatcaaaaacttaattctaattaagatatataccaaatgcattgaatacaattgatcagtgagatatagtgaata |
118 |
Q |
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| T |
6565645 |
actttcgatgtctatagatatcaaagatcaaaaacttaattctaattaagatatataccaaatgcattgaatacaattgatcagtgagatatagtgaata |
6565546 |
T |
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| Q |
119 |
caattgatcgatcactgacttaatctacttacatgggaagggagataaggaggaagacgaggaagtgcgcccaaaggtctagtgagtgctctttctaaca |
218 |
Q |
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| T |
6565545 |
caattgatcgatcactgacttaatctacttacatgggaagggagataaggaggaagacgaggaagtgcgcccaaaggtctagtgagtgctctttctaaca |
6565446 |
T |
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| Q |
219 |
ctctatgaacattctcttcatgtcttagcttcctctttaacttatcaacctgcaaatttcgagcagcataataactacactgaaaaattgcaaatgatgt |
318 |
Q |
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| T |
6565445 |
ctctatgaacattctcttcatgtcttagcttcctctttaacttatcaacctgcaaatttcgagcagcataataactacactgaaaaattgcaaatgatgt |
6565346 |
T |
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| Q |
319 |
gtagaacaattaataatgcaaggaatatgttacactcacatcttgtatcaaagccattttcctttctcgacgtccttttttcaaagtattat |
410 |
Q |
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| T |
6565345 |
gtagaacaattaataatgcaaggaatatgttacactcacatcttgtatcaaagccattttcctttctcgacgtccttttttcaaagtattat |
6565254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 161 - 270
Target Start/End: Original strand, 34261390 - 34261499
Alignment:
| Q |
161 |
agataaggaggaagacgaggaagtgcgcccaaaggtctagtgagtgctctttctaacactctatgaacattctcttcatgtcttagcttcctctttaact |
260 |
Q |
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|||||||||||||||||||| | | || |||||||| || | |||||||||||| |||| |||||||||||||||||||||||||||||||| |||| |
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| T |
34261390 |
agataaggaggaagacgaggcaaagatcctaaaggtcttgtaaatgctctttctaaagctctgtgaacattctcttcatgtcttagcttcctcttcaact |
34261489 |
T |
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| Q |
261 |
tatcaacctg |
270 |
Q |
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|||| ||||| |
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| T |
34261490 |
tatctacctg |
34261499 |
T |
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