View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4822_high_3 (Length: 290)
Name: NF4822_high_3
Description: NF4822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4822_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 13 - 276
Target Start/End: Original strand, 47759181 - 47759444
Alignment:
| Q |
13 |
atcatcattgtcgtcttcttcgatttcttcaaaaatgatacaaggcatgttagtaaagtaaaaatagaaaaatattggcttccattttctctctattttt |
112 |
Q |
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| T |
47759181 |
atcatcattgtcgtcttcttcgatttcttcaaaaatgatacaaggcatgttagtaaagtaaaaatagaaaaatattggcttccattttctctctattttt |
47759280 |
T |
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| Q |
113 |
gaattactacatctagnnnnnnnnatttgaatgcaaaactttgttaaccattacaacttaatattatgaagtagattttaaatcgtcaaaactcaaaatt |
212 |
Q |
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| T |
47759281 |
gaattactacatctagttttttttatttgaatgcaaaactttgttaaccattacaacttaatattatgaagtagattttaaatcgtcaaaactcaaaatt |
47759380 |
T |
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| Q |
213 |
atcctgagttcataccacgatttagacagtctactgaatttagacaaagtcacacaccttcgag |
276 |
Q |
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| T |
47759381 |
atcctgagttcataccacgatttagacagtctactgaatttagacaaagtcacacaccttcgag |
47759444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 13 - 87
Target Start/End: Original strand, 47712283 - 47712357
Alignment:
| Q |
13 |
atcatcattgtcgtcttcttcgatttcttcaaaaatgatacaaggcatgttagtaaagtaaaaatagaaaaatat |
87 |
Q |
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| T |
47712283 |
atcatcattatcattttcttctatttcttcaaacatgatacaaggcatgttagtaaagtaaaaatagaaaaatat |
47712357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 138 - 265
Target Start/End: Original strand, 47744989 - 47745107
Alignment:
| Q |
138 |
tttgaatgcaaaactttgttaaccattacaacttaatattatgaagtagattttaaatcgtcaaaactcaaaattatcctgagttcataccacgatttag |
237 |
Q |
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| T |
47744989 |
tttgaatgcaaaactttgttaaccatcacaacttattattatgaagtagattttatgtcg-------tcaaaattatcctgcattcataccacgacttag |
47745081 |
T |
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| Q |
238 |
acagtctactgaatttagacaaagtcac |
265 |
Q |
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| T |
47745082 |
acag--taacgaatttagacaaagtcac |
47745107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 137 - 276
Target Start/End: Original strand, 47717196 - 47717328
Alignment:
| Q |
137 |
atttgaatgcaaaactttgttaaccattacaacttaatattatgaagtagattttaaatcgtcaaaactcaaaattatcctgagttcataccacgattta |
236 |
Q |
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| T |
47717196 |
atttgaatgcaaaactctgttaaccatcacaacttattattatgaagtaaattttatgtcg-------tcaaaattatcctgcatccataccacgactta |
47717288 |
T |
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| Q |
237 |
gacagtctactgaatttagacaaagtcacacaccttcgag |
276 |
Q |
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| T |
47717289 |
gacagtctaacaaatttaggaaaggtcacataccttcgag |
47717328 |
T |
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