View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4822_high_7 (Length: 239)
Name: NF4822_high_7
Description: NF4822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4822_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 41866101 - 41865880
Alignment:
| Q |
1 |
attttgcagattacaccacagctataaattgtagtcaaattcattccaatatttttaattattgatataattctataagttttgtaataataagatggag |
100 |
Q |
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| T |
41866101 |
attttacagattacaccacagctataaattgtagtcaaattcattccaatatttttaattattgatataattctataagttttgtaataataagatggag |
41866002 |
T |
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| Q |
101 |
ctagtatagaaatctaatagcgaataaaaaataatatctaatagtgataccatttgaataagtcttttcttgatgctaacatcggtcacaatccgagtta |
200 |
Q |
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| T |
41866001 |
ctagtatagaaatctaatagcgaataaaaaataatatctagtagtgataccatttgaataagtcttttcttgatgctaacatcggtcacaatccgagtta |
41865902 |
T |
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| Q |
201 |
tgtttggcggagcattctgcgt |
222 |
Q |
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| T |
41865901 |
tgtttggcggagcattctgcgt |
41865880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 159 - 218
Target Start/End: Complemental strand, 17207584 - 17207525
Alignment:
| Q |
159 |
taagtcttttcttgatgctaacatcggtcacaatccgagttatgtttggcggagcattct |
218 |
Q |
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| T |
17207584 |
taagtcctttcttgatgctagcattggtcgcaatccgagttatgtttggcggagcattct |
17207525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 216
Target Start/End: Complemental strand, 12528058 - 12527998
Alignment:
| Q |
156 |
gaataagtcttttcttgatgctaacatcggtcacaatccgagttatgtttggcggagcatt |
216 |
Q |
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| T |
12528058 |
gaataaatcctttctcaatgccaacattggtcacaatccgagttatgtttggtggagcatt |
12527998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 212
Target Start/End: Original strand, 14484188 - 14484234
Alignment:
| Q |
166 |
tttcttgatgctaacatcggtcacaatccgagttatgtttggcggag |
212 |
Q |
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|||||| |||||| ||| ||||||||||||||||||||| ||||||| |
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| T |
14484188 |
tttcttcatgctaccattggtcacaatccgagttatgttgggcggag |
14484234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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