View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4822_low_1 (Length: 661)
Name: NF4822_low_1
Description: NF4822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4822_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 18 - 300
Target Start/End: Original strand, 48484678 - 48484961
Alignment:
| Q |
18 |
acttaaagtgagaataataagaaagatttgtcacatattaatctagcaagatatgacacatacccattttattagtggttgcattgtgccttctactttc |
117 |
Q |
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| T |
48484678 |
acttcaagtgagaataataagaaagatttgtcacatattaatctagcaagatatgacacatacccattttattagtggttgcattgtgccttctactttc |
48484777 |
T |
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| Q |
118 |
acactatgtttccattttttggctgtacaacctgtatgccgttcccattctgccaatgcctgcttttttgacccacacgtgctacacttgcacaaaactc |
217 |
Q |
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| T |
48484778 |
acactatgtttccattttttggctgtacaacctgtatgccgttcccattctgccaatgcctgcttttttgacccacacgtgatacacttgcacaaaactc |
48484877 |
T |
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| Q |
218 |
tgcaagaaaaattaat-nnnnnnngttatatgaaattctttgaatggcataatagctaattgtgtggtttcttttattgatttg |
300 |
Q |
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| T |
48484878 |
tgcaagaaaaattaataaaaaaaagttatatgaaattctttgaatggcataatagctaattgtgtggtttcttttattgatttg |
48484961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 427 - 645
Target Start/End: Original strand, 48485111 - 48485329
Alignment:
| Q |
427 |
ttatataggttctcatatcagaagtcgtttcacttgtgaaccaagccatatttgttaagaattttgtctgcagcatggagaggaaatcaaaatattttaa |
526 |
Q |
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| T |
48485111 |
ttatataggttctcatatcagaagtcgtttcacttgtgaaccaagccatatttgttaagaattttgtctgcagcatggagaggaaatcaaaatattttaa |
48485210 |
T |
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| Q |
527 |
ttaggctatcaaaccataaaatataaaataagtgttgaaggcttacaaatgaagctttggaaagtatattcctttcatgtcattgcacaccaccgctaga |
626 |
Q |
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| T |
48485211 |
ttaggctatcaaaccctaaaatataaaataagtgttgaaggattacaaatgaagctttggaaagtatattcctttcatgtcattgcacaccaccgctaga |
48485310 |
T |
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| Q |
627 |
ttttcaggtaacacaggtt |
645 |
Q |
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| T |
48485311 |
ttttcaggtaacacaggtt |
48485329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 560 - 621
Target Start/End: Complemental strand, 10035615 - 10035554
Alignment:
| Q |
560 |
gttgaaggcttacaaatgaagctttggaaagtatattcctttcatgtcattgcacaccaccg |
621 |
Q |
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| T |
10035615 |
gttgatggcttacaaatgaagctttgggatgtaaattccttccattccattgcacaccaccg |
10035554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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