View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4822_low_6 (Length: 245)
Name: NF4822_low_6
Description: NF4822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4822_low_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 96 - 236
Target Start/End: Original strand, 43047283 - 43047422
Alignment:
| Q |
96 |
gtatgagtatagaaaaccatcgactccttgaaaactatcgatgattggtaaataaaagaactattggattcagaattgcgattaagcatgtacatggatg |
195 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43047283 |
gtatgagtatagaaaaccatcaactccttgaaaacta-cgatgattagtaaataaaagaactattggattcagaattgcgattaagcatgtacatggatg |
43047381 |
T |
|
| Q |
196 |
gaatggaaaaacaagaaatcgaaaaacaaaagcagtataat |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
43047382 |
gaatggaaaaacaagaaatcgaaaaacaaaagcattataat |
43047422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University