View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4823-Insertion-1 (Length: 913)

Name: NF4823-Insertion-1
Description: NF4823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4823-Insertion-1
NF4823-Insertion-1
[»] chr5 (22 HSPs)
chr5 (25-765)||(13519488-13520225)
chr5 (18-251)||(10736811-10737045)
chr5 (587-753)||(4125917-4126070)
chr5 (36-240)||(4124784-4124990)
chr5 (18-250)||(1103842-1104075)
chr5 (18-113)||(10735772-10735867)
chr5 (44-113)||(11797545-11797614)
chr5 (123-193)||(8188134-8188205)
chr5 (126-260)||(5975870-5976004)
chr5 (123-193)||(9219290-9219361)
chr5 (18-91)||(1102627-1102700)
chr5 (37-188)||(35047447-35047598)
chr5 (44-185)||(11796604-11796745)
chr5 (118-193)||(224524-224600)
chr5 (118-189)||(18695585-18695657)
chr5 (18-88)||(35081474-35081544)
chr5 (18-90)||(28702578-28702650)
chr5 (123-189)||(21389081-21389148)
chr5 (123-192)||(1273200-1273270)
chr5 (35-88)||(4127290-4127343)
chr5 (123-187)||(10978216-10978281)
chr5 (20-113)||(41144530-41144623)
[»] chr1 (21 HSPs)
chr1 (18-247)||(48528773-48529004)
chr1 (44-260)||(40533467-40533685)
chr1 (18-191)||(26287709-26287891)
chr1 (44-191)||(12667208-12667356)
chr1 (18-113)||(7306267-7306362)
chr1 (126-194)||(24516448-24516517)
chr1 (126-194)||(40110585-40110654)
chr1 (45-185)||(51446782-51446923)
chr1 (126-196)||(26803147-26803218)
chr1 (20-90)||(48527545-48527615)
chr1 (44-185)||(14479454-14479596)
chr1 (18-91)||(26286421-26286494)
chr1 (18-91)||(5613119-5613192)
chr1 (44-185)||(28051547-28051688)
chr1 (126-194)||(33941431-33941500)
chr1 (22-98)||(7304825-7304901)
chr1 (50-113)||(12665832-12665895)
chr1 (109-170)||(32459551-32459613)
chr1 (34-91)||(5611751-5611808)
chr1 (103-175)||(14429845-14429918)
chr1 (123-187)||(51217729-51217794)
[»] chr4 (22 HSPs)
chr4 (18-222)||(36846462-36846666)
chr4 (123-260)||(46795893-46796031)
chr4 (43-255)||(52137460-52137673)
chr4 (18-196)||(26631147-26631326)
chr4 (125-256)||(47667291-47667423)
chr4 (51-275)||(44499838-44500058)
chr4 (18-203)||(35348806-35348992)
chr4 (118-256)||(38554035-38554174)
chr4 (18-191)||(1521118-1521301)
chr4 (18-241)||(39056434-39056658)
chr4 (127-194)||(41348354-41348422)
chr4 (118-256)||(29665445-29665584)
chr4 (44-185)||(8363328-8363470)
chr4 (44-107)||(26491452-26491515)
chr4 (118-190)||(307742-307815)
chr4 (18-91)||(1519820-1519893)
chr4 (77-181)||(26495190-26495295)
chr4 (125-189)||(56001207-56001271)
chr4 (127-189)||(3528305-3528368)
chr4 (42-91)||(26629824-26629873)
chr4 (95-185)||(36244706-36244797)
chr4 (44-185)||(56156970-56157112)
[»] chr7 (22 HSPs)
chr7 (17-215)||(43442672-43442871)
chr7 (123-260)||(28326260-28326395)
chr7 (123-260)||(41515107-41515245)
chr7 (123-260)||(17288107-17288247)
chr7 (35-185)||(35296757-35296908)
chr7 (18-241)||(10955854-10956078)
chr7 (60-191)||(666777-666909)
chr7 (123-185)||(32653577-32653640)
chr7 (123-189)||(45721704-45721771)
chr7 (18-90)||(10957189-10957261)
chr7 (102-193)||(26146638-26146730)
chr7 (44-185)||(41329409-41329551)
chr7 (44-98)||(35295734-35295788)
chr7 (44-113)||(669400-669469)
chr7 (18-90)||(26135650-26135722)
chr7 (126-192)||(29589202-29589269)
chr7 (51-146)||(44376667-44376762)
chr7 (51-146)||(44385534-44385629)
chr7 (123-184)||(14107943-14108005)
chr7 (123-184)||(14417900-14417962)
chr7 (125-194)||(25532257-25532327)
chr7 (158-260)||(30333424-30333526)
[»] chr8 (22 HSPs)
chr8 (44-260)||(42793734-42793951)
chr8 (35-193)||(43203211-43203370)
chr8 (35-196)||(31844394-31844556)
chr8 (34-277)||(24191402-24191642)
chr8 (123-260)||(38096-38234)
chr8 (18-193)||(24306056-24306232)
chr8 (19-113)||(38697878-38697972)
chr8 (18-91)||(43202105-43202178)
chr8 (123-189)||(39516435-39516502)
chr8 (126-194)||(22621067-22621136)
chr8 (123-189)||(7770108-7770175)
chr8 (123-189)||(7777785-7777852)
chr8 (118-194)||(34616240-34616317)
chr8 (94-185)||(9853652-9853744)
chr8 (123-260)||(45395883-45396020)
chr8 (42-91)||(31845828-31845877)
chr8 (165-248)||(24068472-24068553)
chr8 (44-112)||(28291330-28291398)
chr8 (127-181)||(36757166-36757221)
chr8 (45-187)||(38697192-38697335)
chr8 (123-196)||(16362530-16362604)
chr8 (21-90)||(17455059-17455128)
[»] chr2 (12 HSPs)
chr2 (44-260)||(19397565-19397782)
chr2 (18-185)||(1147758-1147926)
chr2 (44-185)||(28610057-28610199)
chr2 (20-98)||(1309409-1309487)
chr2 (45-185)||(4919863-4920004)
chr2 (19-111)||(19398814-19398906)
chr2 (35-98)||(1310695-1310758)
chr2 (18-90)||(1149223-1149295)
chr2 (118-205)||(40174687-40174774)
chr2 (77-184)||(45699597-45699705)
chr2 (21-67)||(102414-102460)
chr2 (127-191)||(16289895-16289960)
[»] chr3 (16 HSPs)
chr3 (123-311)||(10339812-10339994)
chr3 (126-307)||(10301640-10301817)
chr3 (118-260)||(53809363-53809503)
chr3 (118-256)||(48253039-48253178)
chr3 (125-256)||(47766822-47766954)
chr3 (19-113)||(37416450-37416544)
chr3 (94-185)||(14744148-14744240)
chr3 (123-191)||(7271527-7271596)
chr3 (104-196)||(20486100-20486193)
chr3 (18-113)||(37415004-37415099)
chr3 (123-189)||(17345421-17345488)
chr3 (44-113)||(14745212-14745281)
chr3 (94-185)||(49380893-49380985)
chr3 (123-196)||(54750374-54750447)
chr3 (123-192)||(8372551-8372621)
chr3 (34-91)||(7270348-7270405)
[»] scaffold0219 (2 HSPs)
scaffold0219 (17-119)||(8196-8298)
scaffold0219 (43-248)||(6929-7133)
[»] chr6 (7 HSPs)
chr6 (123-191)||(18242243-18242312)
chr6 (18-193)||(138137-138313)
chr6 (18-193)||(146158-146334)
chr6 (18-90)||(136636-136708)
chr6 (18-90)||(30231487-30231559)
chr6 (126-188)||(30232842-30232905)
chr6 (20-98)||(11968504-11968582)
[»] scaffold0114 (1 HSPs)
scaffold0114 (44-185)||(38575-38717)
[»] scaffold0148 (1 HSPs)
scaffold0148 (108-145)||(15832-15869)
[»] scaffold0046 (1 HSPs)
scaffold0046 (118-189)||(24753-24825)
[»] scaffold0084 (1 HSPs)
scaffold0084 (123-189)||(11817-11884)


Alignment Details
Target: chr5 (Bit Score: 599; Significance: 0; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 599; E-Value: 0
Query Start/End: Original strand, 25 - 765
Target Start/End: Original strand, 13519488 - 13520225
Alignment:
Q  25 gttccctacctaatttcttgtttacattttagtcccataactcgaaaaatcaacattttggtccctcttgttttactccgtttgtcaaattgatcatttc 124  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||  |||    
T  13519488 gttccctaactaatttcttgtttacattttagtcccataactcgaaaaatcaacattttggtccttcttgttttgctccgtttgtcaaattgatcccttc 13519587  T
Q  125 cgttagttt-----tttaatgtctaaaacttttaatat-attttaaccatttgattgcatgtccattgtatttaacagcggaccgcccgcacctaataat 218  Q
    |||||||||     ||||||||||||||||||| |||| |||||||||||||||||||||||         |||||||||||||||| |||||||||| |    
T  13519588 cgttagtttagttttttaatgtctaaaacttttgatatgattttaaccatttgattgcatgt---------ttaacagcggaccgcctgcacctaatatt 13519678  T
Q  219 tttcgtttatcatcatcttctcttttcttcttcctcatatctatacatcaacattttccaaaatttcttttctttccaatatacaaatccaaaagcttca 318  Q
    |||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  13519679 tttcgtttatcatcctcttctcttttcttcttcctcatatctatatatcaacattttccagaatttcttttctttccaatatacaaatccaaaagcttca 13519778  T
Q  319 caaaaagtacccatttttccagaatatctcctacacctatcatttccagaaagtaccaattcaacacaacatcaatgtgaagtgggtgcaatctgcacaa 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  13519779 caaaaagtacccatttttccagaatatctcctacacctatcattttcagaaagtaccaattcaacacaacatcaatgtaaagtgggtgcaatctgcacaa 13519878  T
Q  419 acacgcctatgttctatacatgagtaagtaaatttgtaagcaacaccaacaagttaatctacaaaattgaatttacatattaatttccctttatttccta 518  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  13519879 acacgcctatgttctatacatgagtaagtaaatttgtaagcaacaccaacaagttaatctacaaaattgaatttacacattaatttccctttatttccta 13519978  T
Q  519 tgttcttcaatttgcacaatcacgccgccacggaatacagaaacagctccgatgaacaacacgatgaatgattcagatttgtttgaataatttgttagat 618  Q
    || |||||||| |||||||||||||| ||||||||||| |||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||    
T  13519979 tgctcttcaatctgcacaatcacgcctccacggaatacggaaacagctcggatgaacaacaccatgaatgattcagatttgtttgaataatttgttagat 13520078  T
Q  619 tcgtattcgttttactgggttgaatctggattcatattcgttagattcgaattcatttgaagaatttgttagatttcggttgaatatggagttttgaatg 718  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  13520079 tcgtattcgttttactgggttgaatctggattcatattcgttagattcgaattcatttgaagaatttgttagatttgggttgaatatggatttttgaatg 13520178  T
Q  719 atgaatgaataggaatgagttgctctatgcttctgcctttcttcttc 765  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  13520179 atgaatgaataggaatgagttgctctatgcttctgcctttcttcttc 13520225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 18 - 251
Target Start/End: Complemental strand, 10737045 - 10736811
Alignment:
Q  18 acttttggttccctacctaatttcttgtttacattttagtcccataactcgaaaaatcaacattttggtccctcttgttttactccgtttgtcaaattga 117  Q
    ||||||||| |||||  ||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||  |||| |||     
T  10737045 acttttggtcccctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccgttaatcaatttgg 10736946  T
Q  118 tcatttccgttagttttttaatgtctaaaacttttaatat-attttaaccatttgattgcatgtccattgtatttaacagcggaccgcccgcacctaata 216  Q
    ||   |||||||  |||||||||||||||| |||| || | |||||||||||||||||| ||||||||||||| ||| || | |||| |  ||| ||||     
T  10736945 tcccctccgttaactttttaatgtctaaaatttttgatttgattttaaccatttgattgaatgtccattgtatctaatagtgaaccgtcaacacttaatt 10736846  T
Q  217 attttcgtttatcatcatcttctcttttcttcttc 251  Q
     |||||  ||  ||||||||||||| |||||||||    
T  10736845 tttttcactttccatcatcttctctcttcttcttc 10736811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 587 - 753
Target Start/End: Original strand, 4125917 - 4126070
Alignment:
Q  587 tgattcagatttgtttgaataatttgttagattcgtattcgttttactgggttgaatctggattcatattcgttagattcgaattcatttgaagaatttg 686  Q
    ||||||||||| ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||              ||||||    
T  4125917 tgattcagattcgtttgaagaatttgttggattcgtattcgttttactgggttgaatctggattcatattcgttagattc-------------aaatttg 4126003  T
Q  687 ttagatttcggttgaatatggagttttgaatgatgaatgaataggaatgagttgctctatgcttctg 753  Q
    ||||||   ||||||||||| | | |||||||||||||||||| |||||||||| |||||| |||||    
T  4126004 ttagatcagggttgaatatgaattcttgaatgatgaatgaataagaatgagttgttctatgtttctg 4126070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 36 - 240
Target Start/End: Original strand, 4124784 - 4124990
Alignment:
Q  36 aatttcttgtttacattttagtcccataactcgaaaaatcaacattttggtccctcttgttttactccgtttgtcaaattgatcatttccgttagttttt 135  Q
    |||||||||||| |||||| || |||||| ||  ||||||||| ||||||||||| ||||||| ||||||| || || ||| ||   | | |||||| ||    
T  4124784 aatttcttgttttcattttggttccataattcataaaatcaacgttttggtcccttttgttttgctccgttagttaatttggtccccttcattagttgtt 4124883  T
Q  136 taatgtctaaaacttttaatata-ttttaaccatttgattgcatgtccattgtatttaacagcggaccgcccgcacct-aataattttcgtttatcatca 233  Q
    |||||| ||||| |||| || || ||||||||||||||||| || |||||||||||||| || | |||| | |||||| | |||||||| ||| ||||||    
T  4124884 taatgtttaaaaattttgatttaattttaaccatttgattgtatatccattgtatttaatagtgaaccgtcagcacctgattaattttcatttttcatca 4124983  T
Q  234 tcttctc 240  Q
    |||||||    
T  4124984 tcttctc 4124990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 18 - 250
Target Start/End: Complemental strand, 1104075 - 1103842
Alignment:
Q  18 acttttggttccctacctaatttcttgtttacattttagtcccataactcgaaaaatcaacattttggtccctcttgttttactccgtttgtcaaattga 117  Q
    ||||||||| |||||  |||||| ||||| ||||||||||||||||||||| |||||||||||||  || ||||||||||| ||| ||| | ||  |||     
T  1104075 acttttggtcccctaagtaatttgttgttaacattttagtcccataactcgtaaaatcaacatttcagttcctcttgtttttctctgttagccagtttgg 1103976  T
Q  118 tcatttccgttagttttttaatgtctaaaacttttaatat-attttaaccatttgattgcatgtccattgtatttaacagcggaccgcccgcacctaata 216  Q
    ||   |||||||||||| |||| |||||||   || || | |||||||||||| |||| |||| ||||||||||||| ||   |||| |  ||||||||     
T  1103975 tcccctccgttagttttataatatctaaaaaaattgatttgattttaaccattagattacatgcccattgtatttaatagttaaccgtcaacacctaatt 1103876  T
Q  217 attttcgtttatcatcatcttctcttttcttctt 250  Q
    |||||   || |||||||||||||| ||||||||    
T  1103875 atttttacttttcatcatcttctctcttcttctt 1103842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 18 - 113
Target Start/End: Original strand, 10735772 - 10735867
Alignment:
Q  18 acttttggttccctacctaatttcttgtttacattttagtcccataactcgaaaaatcaacattttggtccctcttgttttactccgtttgtcaaa 113  Q
    ||||||||| |||||  ||||| ||||||| |||||| ||||||||||||| ||||||||| ||||||||||||||||||| ||||||| ||||||    
T  10735772 acttttggtcccctaagtaattacttgttttcattttggtcccataactcgtaaaatcaacgttttggtccctcttgttttgctccgttagtcaaa 10735867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 44 - 113
Target Start/End: Complemental strand, 11797614 - 11797545
Alignment:
Q  44 gtttacattttagtcccataactcgaaaaatcaacattttggtccctcttgttttactccgtttgtcaaa 113  Q
    ||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||    
T  11797614 gtttacattttggtctcataactcgtaaaatcaacattttggtccctcttgtttttctccgttagtcaaa 11797545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 123 - 193
Target Start/End: Complemental strand, 8188205 - 8188134
Alignment:
Q  123 tccgttagttttttaatgtctaaaacttttaatat-attttaaccatttgattgcatgtccattgtatttaa 193  Q
    ||||||||||||||||||||||||| || | |||| |||||||||||||||||||||||||||| |||||||    
T  8188205 tccgttagttttttaatgtctaaaatttctgatatgattttaaccatttgattgcatgtccattatatttaa 8188134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 126 - 260
Target Start/End: Original strand, 5975870 - 5976004
Alignment:
Q  126 gttagttttttaatgtctaaaacttttaatat-attttaaccatttgattgcatgtccattgtatttaacagcggaccgcccgcacctaa-taattttcg 223  Q
    |||||||||||||||||||||  |||| |||| |||||||||||||||||||||||||||| | ||||| |  | |||| | |||||||| |  |||||     
T  5975870 gttagttttttaatgtctaaagtttttgatatgattttaaccatttgattgcatgtccattatgtttaata--gaaccgtcggcacctaattttttttca 5975967  T
Q  224 tttatcatcatcttctcttttcttcttcctcatatct 260  Q
     || |||||||||||||| |||| |||||||||||||    
T  5975968 cttttcatcatcttctctcttctccttcctcatatct 5976004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 123 - 193
Target Start/End: Original strand, 9219290 - 9219361
Alignment:
Q  123 tccgttagttttttaatgtctaaaacttttaatat-attttaaccatttgattgcatgtccattgtatttaa 193  Q
    ||||||||||||||||||||||||| |||| || | ||||||||| ||||||||||||| ||||||||||||    
T  9219290 tccgttagttttttaatgtctaaaattttttatttgattttaaccgtttgattgcatgttcattgtatttaa 9219361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 1102627 - 1102700
Alignment:
Q  18 acttttggttccctacctaatttcttgtttacattttagtcccataactcgaaaaatcaacattttggtccctc 91  Q
    ||||||||| || || ||||||| |||||||||| || ||||||||||||| ||||||||||||| ||||||||    
T  1102627 acttttggtcccataactaatttgttgtttacatattggtcccataactcgtaaaatcaacatttaggtccctc 1102700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 37 - 188
Target Start/End: Original strand, 35047447 - 35047598
Alignment:
Q  37 atttcttgtttacattttagtcccataactcgaaaaatcaacattttggtccctcttgttttactccgtttgtcaaattgatcatttccgttagtttttt 136  Q
    ||||| ||||| |||||| ||||||||||||| ||||||||| ||   |||||| ||||||| ||||||| ||||||  | ||   ||| ||||||||||    
T  35047447 atttcgtgttttcattttggtcccataactcgtaaaatcaacgttcaagtcccttttgttttgctccgttagtcaaaaaggtc-catccattagtttttt 35047545  T
Q  137 aatgtctaaaacttttaatat-attttaaccatttgattgcatgtccattgta 188  Q
    ||||  ||||  |||| |||| ||||||| |||| ||||||||||||||||||    
T  35047546 aatgcttaaattttttgatataattttaatcattcgattgcatgtccattgta 35047598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 44 - 185
Target Start/End: Original strand, 11796604 - 11796745
Alignment:
Q  44 gtttacattttagtcccataactcgaaaaatcaacattttggtccctcttgttttactccgtttgtcaaattgatcatttccgttagttttttaatgtct 143  Q
    ||||||||||| ||||||||| | | ||||   | |||||||||||| | ||||| |||| |  ||||||||||||   |||| |||||||||||||| |    
T  11796604 gtttacattttggtcccataaattgtaaaactcatattttggtccct-tggttttgctccctcagtcaaattgatcccatccgctagttttttaatgttt 11796702  T
Q  144 aaaacttttaatat-attttaaccatttgattgcatgtccatt 185  Q
    ||||||||| |||| || ||| || ||||||||||||||||||    
T  11796703 aaaacttttgatatgatattagccgtttgattgcatgtccatt 11796745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 118 - 193
Target Start/End: Complemental strand, 224600 - 224524
Alignment:
Q  118 tcatttccgttagttttttaatgtctaaaacttttaatat-attttaaccatttgattgcatgtccattgtatttaa 193  Q
    |||| ||||||||||||||||||||||||  |||| |||| | |||||||||||||| ||| || ||||||||||||    
T  224600 tcatctccgttagttttttaatgtctaaattttttgatatgactttaaccatttgatcgcacgttcattgtatttaa 224524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 118 - 189
Target Start/End: Complemental strand, 18695657 - 18695585
Alignment:
Q  118 tcatttccgttagttttttaatgtctaaaacttttaatatatttt-aaccatttgattgcatgtccattgtat 189  Q
    |||| ||||||||||||||||||||||||| |||| |||| |||| |||| |||||||||| || ||||||||    
T  18695657 tcatctccgttagttttttaatgtctaaaatttttgatatgttttcaaccgtttgattgcaggttcattgtat 18695585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 35081544 - 35081474
Alignment:
Q  18 acttttggttccctacctaatttcttgtttacattttagtcccataactcgaaaaatcaacattttggtcc 88  Q
    ||||||||| |||||  |||||  |||||| |||||| ||||||||||||| ||||||||| |||||||||    
T  35081544 acttttggtcccctaagtaattgtttgttttcattttggtcccataactcgtaaaatcaacgttttggtcc 35081474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 28702578 - 28702650
Alignment:
Q  18 acttttggttccctacctaatttcttgtttacattttagtcccataactcgaaaaatcaacattttggtccct 90  Q
    |||||| || |||||  |||||| |||||| |||||| ||||||||||||| ||||| ||| |||||||||||    
T  28702578 actttttgtcccctaagtaatttgttgttttcattttggtcccataactcgtaaaattaacgttttggtccct 28702650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 189
Target Start/End: Complemental strand, 21389148 - 21389081
Alignment:
Q  123 tccgttagttttttaatgtctaaaacttttaatatatttt-aaccatttgattgcatgtccattgtat 189  Q
    ||||||||||||||||||||||||| |||| |||| |||| |||| |||||||| | || ||||||||    
T  21389148 tccgttagttttttaatgtctaaaattttttatatgttttcaaccgtttgattgtaggttcattgtat 21389081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 192
Target Start/End: Original strand, 1273200 - 1273270
Alignment:
Q  123 tccgttagttttttaatgtctaaaacttttaatat-attttaaccatttgattgcatgtccattgtattta 192  Q
    ||||||||||||||||||| ||| | |||| |||| |||| ||||||| ||||||| ||||||| ||||||    
T  1273200 tccgttagttttttaatgtttaatatttttgatatgatttcaaccattcgattgcaggtccattatattta 1273270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 88
Target Start/End: Complemental strand, 4127343 - 4127290
Alignment:
Q  35 taatttcttgtttacattttagtcccataactcgaaaaatcaacattttggtcc 88  Q
    |||||| |||||| |||||| ||||||||||||| ||||| ||| |||||||||    
T  4127343 taatttgttgttttcattttggtcccataactcgtaaaattaacgttttggtcc 4127290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 187
Target Start/End: Complemental strand, 10978281 - 10978216
Alignment:
Q  123 tccgttagttttttaatgtctaaaacttttaatata-ttttaaccatttgattgcatgtccattgt 187  Q
    |||||||| |||||||||| ||| | |||| ||||| ||||||||||| ||||||||| |||||||    
T  10978281 tccgttagatttttaatgtttaatatttttgatataattttaaccattcgattgcatgcccattgt 10978216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 113
Target Start/End: Complemental strand, 41144623 - 41144530
Alignment:
Q  20 ttttggttccctacctaatttcttgtttacattttagtcccataactcgaaaaatcaacattttggtccctcttgttttactccgtttgtcaaa 113  Q
    ||||||| |||||  |||||| |||||| |||||| ||||||||| |   ||||||||| ||||||||||| |  |||| ||||||| ||||||    
T  41144623 ttttggtcccctaattaatttgttgttttcattttggtcccataaattctaaaatcaacgttttggtccctttgattttgctccgttagtcaaa 41144530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 92; Significance: 3e-44; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 18 - 247
Target Start/End: Complemental strand, 48529004 - 48528773
Alignment:
Q  18 acttttggttccctacctaatttcttgtttacattttagtcccataactcgaaaaatcaacattttggtccctcttgttttactccgtttgtcaaattga 117  Q
    ||||||||| ||| |  |||||| ||||||||||||| ||||||||||||| |||||||||||||| ||||||||| |||| ||||||| ||||| |||     
T  48529004 acttttggtcccccaagtaatttgttgtttacattttggtcccataactcgtaaaatcaacattttagtccctcttatttttctccgttagtcaatttgg 48528905  T
Q  118 tcatttccgttagttttttaatgtctaaaacttttaatat-atttt-aaccatttgattgcatgtccattgtatttaacagcggaccgcccgcacctaat 215  Q
    ||   ||||||||||||||||| |||||||||||| || | ||||| ||||||| ||||||||||||||||||||||| || | |||| |  ||||||||    
T  48528904 tcccatccgttagttttttaatatctaaaacttttgatttgattttaaaccattagattgcatgtccattgtatttaatagtgaaccgtcaacacctaat 48528805  T
Q  216 aattttcgtttatcatcatcttctcttttctt 247  Q
     ||||||  || |||||||||||||| |||||    
T  48528804 tattttcacttttcatcatcttctctcttctt 48528773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 44 - 260
Target Start/End: Complemental strand, 40533685 - 40533467
Alignment:
Q  44 gtttacattttagtcccataactcgaaaaatcaacattttggtccctcttgttttactccgtttgtcaaattgatcatttccgttagttttttaatgtct 143  Q
    ||||||||||| || |||||| | | |||| |||||||||||||||||| | ||| ||||||| ||||||  | ||   ||||||| |||||||||||||    
T  40533685 gtttacattttggttccataaattgtaaaaccaacattttggtccctctcgctttgctccgttagtcaaaaaggtcccctccgttaattttttaatgtct 40533586  T
Q  144 aaaacttttaatat-attttaaccatttgattgcatgtccattgtatttaacagcggaccgcccgcacctaa-taattttcgtttatcatcatcttctct 241  Q
    ||||||||| |||| |||||||||||| |||||||||||||||||| |||| || | |||| | |||||||| | ||||||| || ||||||||||||||    
T  40533585 aaaacttttgatatgattttaaccattggattgcatgtccattgtaattaatagtgaaccgtcggcacctaatttattttcgcttttcatcatcttctct 40533486  T
Q  242 tttcttcttcctcatatct 260  Q
     ||||||||||| ||||||    
T  40533485 cttcttcttcctgatatct 40533467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 18 - 191
Target Start/End: Complemental strand, 26287891 - 26287709
Alignment:
Q  18 acttttggttccctacctaatttcttgtttacattttagtcccataactcgaaaaatcaacattttggtccctcttgttttactccgtttgtcaaattga 117  Q
    ||||||||| | ||| ||||||| |||||| |||||| ||||||||| ||| ||||||||||||||||||||||   |||||||||||| ||||| |||     
T  26287891 acttttggtcctctaactaatttgttgttttcattttggtcccataattcgtaaaatcaacattttggtccctcaacttttactccgttagtcaatttgg 26287792  T
Q  118 tcat---------ttccgttagttttttaatgtctaaaacttttaatatattttaaccatttgattgcatgtccattgtattt 191  Q
    || |          ||||||| ||||||||||||||||  ||||| |  |||||||||||||||||| ||||||| |||||||    
T  26287791 tcctcaacttttactccgttaattttttaatgtctaaattttttatttgattttaaccatttgattgtatgtccaatgtattt 26287709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 44 - 191
Target Start/End: Complemental strand, 12667356 - 12667208
Alignment:
Q  44 gtttacattttagtcccataactcgaaaaatcaacattttggtccctcttgttttactccgtttgtcaaattgatcatttccgttagttttttaatgtct 143  Q
    |||| |||||| |||| | || ||| ||||| ||||||| ||||||||||||||| ||||||| ||||| ||| ||   ||||||||||||||||||||     
T  12667356 gttttcattttggtcctagaattcgtaaaattaacatttcggtccctcttgttttgctccgttagtcaacttggtcccctccgttagttttttaatgtcg 12667257  T
Q  144 aaaacttttaatat-attttaaccatttgattgcatgtccattgtattt 191  Q
    |||  |||| || | ||||||| |||||||||||||||| |||||||||    
T  12667256 aaattttttgatttgattttaatcatttgattgcatgtctattgtattt 12667208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 18 - 113
Target Start/End: Complemental strand, 7306362 - 7306267
Alignment:
Q  18 acttttggttccctacctaatttcttgtttacattttagtcccataactcgaaaaatcaacattttggtccctcttgttttactccgtttgtcaaa 113  Q
    |||||||||||| ||  |||||| |||||| |||||| |||| |||||||| ||||| ||||||||||||||||||||||| ||| ||| ||||||    
T  7306362 acttttggttccttaagtaatttgttgttttcattttggtcctataactcgtaaaattaacattttggtccctcttgttttcctctgttagtcaaa 7306267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 126 - 194
Target Start/End: Original strand, 24516448 - 24516517
Alignment:
Q  126 gttagttttttaatgtctaaaacttttaatat-attttaaccatttgattgcatgtccattgtatttaac 194  Q
    |||||||||||||||| ||||| | || |||| |||||||||||||||||||||||||||||||||||||    
T  24516448 gttagttttttaatgtataaaattcttgatatgattttaaccatttgattgcatgtccattgtatttaac 24516517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 126 - 194
Target Start/End: Complemental strand, 40110654 - 40110585
Alignment:
Q  126 gttagttttttaatgtctaaaacttttaatat-attttaaccatttgattgcatgtccattgtatttaac 194  Q
    |||||||||||||||| ||||| | || |||| |||||||||||||||||||||||||||||||||||||    
T  40110654 gttagttttttaatgtataaaattattgatatgattttaaccatttgattgcatgtccattgtatttaac 40110585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 45 - 185
Target Start/End: Complemental strand, 51446923 - 51446782
Alignment:
Q  45 tttacattttagtcccataactcgaaaaatcaacattttggtccctcttgttttactccgtttgtcaaattgatcatttccgttagttttttaatgtcta 144  Q
    |||||||||| ||| ||||| | | |||| | |||||||||||||  | ||||| ||||||  ||||||||||||   ||||||||||||||||| ||||    
T  51446923 tttacattttggtcacataaattgtaaaacccacattttggtccccttggttttgctccgtcagtcaaattgatcccctccgttagttttttaatatcta 51446824  T
Q  145 aaacttttaatat-attttaaccatttgattgcatgtccatt 185  Q
    ||  |||| |||| ||||||||  ||||||||||||||||||    
T  51446823 aattttttgatatgattttaactgtttgattgcatgtccatt 51446782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 126 - 196
Target Start/End: Complemental strand, 26803218 - 26803147
Alignment:
Q  126 gttagttttttaatgtctaaaacttttaatat-attttaaccatttgattgcatgtccattgtatttaacag 196  Q
    |||||| ||||||||| ||||| | || |||| |||||||||||||||||||||||||||||||||||||||    
T  26803218 gttagtattttaatgtataaaattcttgatatgattttaaccatttgattgcatgtccattgtatttaacag 26803147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 90
Target Start/End: Original strand, 48527545 - 48527615
Alignment:
Q  20 ttttggttccctacctaatttcttgtttacattttagtcccataactcgaaaaatcaacattttggtccct 90  Q
    ||||||| |||||  |||||| ||||||||||||| ||||||||||||| ||||| |||||||||||||||    
T  48527545 ttttggtcccctaagtaatttgttgtttacattttggtcccataactcgtaaaattaacattttggtccct 48527615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 44 - 185
Target Start/End: Complemental strand, 14479596 - 14479454
Alignment:
Q  44 gtttacattttagtcccataactcgaaaaatcaacattttggtccctcttgttttactccgtttgtcaaattgatcatttccgttagttttttaatgtct 143  Q
    ||||||||||| ||||||||| | | ||||   |||||||||||||  | ||||| |||| |  ||||||||||||   ||||||||||||||||||  |    
T  14479596 gtttacattttggtcccataaattgtaaaactcacattttggtccccttggttttgctccatcagtcaaattgatcccctccgttagttttttaatgatt 14479497  T
Q  144 aaaacttttaata-tattttaaccatttgattgcatgtccatt 185  Q
    |||| |||| ||| ||| ||| || ||||||||||||||||||    
T  14479496 aaaatttttgatattatattagccgtttgattgcatgtccatt 14479454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 26286421 - 26286494
Alignment:
Q  18 acttttggttccctacctaatttcttgtttacattttagtcccataactcgaaaaatcaacattttggtccctc 91  Q
    ||||||||| ||||| ||||||| | |||| |||||| ||||||||| ||| ||||||||||| ||||||||||    
T  26286421 acttttggtcccctaactaatttgtcgttttcattttggtcccataattcgtaaaatcaacatattggtccctc 26286494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 5613192 - 5613119
Alignment:
Q  18 acttttggttccctacctaatttcttgtttacattttagtcccataactcgaaaaatcaacattttggtccctc 91  Q
    ||||||| | ||||| ||||||| | |||| |||||| ||||||||| ||| ||||||||||| ||||||||||    
T  5613192 acttttgatcccctaactaatttgtcgttttcattttggtcccataattcgtaaaatcaacatattggtccctc 5613119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 185
Target Start/End: Complemental strand, 28051688 - 28051547
Alignment:
Q  44 gtttacattttagtcccataactcgaaaaatcaacattttggtccctcttg-ttttactccgtttgtcaaattgat-catttccgttagttttttaatgt 141  Q
    ||||||||||| ||||||||| | | ||||   ||||||||||||| |||| |||| ||||||| ||||||||||| |||  |||||| |||||||||||    
T  28051688 gtttacattttggtcccataaattgtaaaactcacattttggtccc-cttgattttgctccgttagtcaaattgattcat--ccgttaattttttaatgt 28051592  T
Q  142 ctaaaacttttaatat-attttaaccatttgattgcatgtccatt 185  Q
     ||||| |||| |||| || ||| |  ||||||||||||||||||    
T  28051591 ttaaaatttttgatatgatattagctgtttgattgcatgtccatt 28051547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 194
Target Start/End: Original strand, 33941431 - 33941500
Alignment:
Q  126 gttagttttttaatgtctaaaacttttaatat-attttaaccatttgattgcatgtccattgtatttaac 194  Q
    |||||||||||||||||||| | ||||||||| ||||||||| |||||||||| || || ||||| ||||    
T  33941431 gttagttttttaatgtctaacatttttaatatgattttaaccgtttgattgcaggtgcactgtatataac 33941500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 98
Target Start/End: Original strand, 7304825 - 7304901
Alignment:
Q  22 ttggttccctacctaatttcttgtttacattttagtcccataactcgaaaaatcaacattttggtccctcttgtttt 98  Q
    ||||||||| |  |||||| |||||| |||| |  |||||||||||| |||||||| ||||||||||||||| ||||    
T  7304825 ttggttcccgaaataatttgttgttttcattgtgatcccataactcgtaaaatcaatattttggtccctcttatttt 7304901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 113
Target Start/End: Original strand, 12665832 - 12665895
Alignment:
Q  50 attttagtcccataactcgaaaaatcaacattttggtccctcttgttttactccgtttgtcaaa 113  Q
    ||||| ||||||||| ||| ||||||||||||| |||||||||| |||| || |||| ||||||    
T  12665832 attttggtcccataattcgtaaaatcaacatttcggtccctcttattttgcttcgttagtcaaa 12665895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 170
Target Start/End: Complemental strand, 32459613 - 32459551
Alignment:
Q  109 tcaaattgatcatttccgttagttttttaatgtctaaaacttttaata-tattttaaccattt 170  Q
    |||||||||| ||||| |||||||||||||||||||| | || | ||| ||||||||||||||    
T  32459613 tcaaattgatgatttctgttagttttttaatgtctaatatttatgatattattttaaccattt 32459551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 91
Target Start/End: Original strand, 5611751 - 5611808
Alignment:
Q  34 ctaatttcttgtttacattttagtcccataactcgaaaaatcaacattttggtccctc 91  Q
    ||||||| |||||| |||||| ||||||||| | | ||||||||||||||||| ||||    
T  5611751 ctaatttgttgttttcattttggtcccataatttgtaaaatcaacattttggtgcctc 5611808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 175
Target Start/End: Original strand, 14429845 - 14429918
Alignment:
Q  103 cgtttgtcaaattgatcatttccgttagttttttaatgtctaaaacttttaatat-attttaaccatttgattg 175  Q
    |||| |||||||||||||| || |||| ||||||||||||||| | | || |||| ||||||||| ||||||||    
T  14429845 cgttagtcaaattgatcatctctgttatttttttaatgtctaatattcttgatatgattttaaccgtttgattg 14429918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 187
Target Start/End: Original strand, 51217729 - 51217794
Alignment:
Q  123 tccgttagttttttaatgtctaaaacttttaatat-attttaaccatttgattgcatgtccattgt 187  Q
    |||||||||||||||||| |||| | |||| |||| |||| ||||||| ||||||||||| |||||    
T  51217729 tccgttagttttttaatgactaatatttttgatataatttcaaccattagattgcatgtctattgt 51217794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 90; Significance: 5e-43; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 18 - 222
Target Start/End: Complemental strand, 36846666 - 36846462
Alignment:
Q  18 acttttggttccctacctaatttcttgtttacattttagtcccataactcgaaaaatcaacattttggtccctcttgttttactccgtttgtcaaattga 117  Q
    ||||||||  |||||  |||||| |||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||| |||     
T  36846666 acttttggccccctaagtaatttgttgttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccgttcgtcaatttgg 36846567  T
Q  118 tcatttccgttagttttttaatgtctaaaacttttaatat-attttaaccatttgattgcatgtccattgtatttaacagcggaccgcccgcacctaata 216  Q
    ||  |||||||||| ||||||||||||||  |||| || | |||||||||||||||||||||||||||| |||||||||| | |||| |  |||||||||    
T  36846566 tcccttccgttagt-ttttaatgtctaaattttttgatttgattttaaccatttgattgcatgtccattatatttaacagtgaaccgtcaacacctaata 36846468  T
Q  217 attttc 222  Q
     |||||    
T  36846467 tttttc 36846462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 123 - 260
Target Start/End: Complemental strand, 46796031 - 46795893
Alignment:
Q  123 tccgttagttttttaatgtctaaaacttttaatat-attttaaccatttgattgcatgtccattgtatttaacagcggaccgcccgcacctaataatttt 221  Q
    ||||||||||||||||||||||||  |||| |||| |||||||||||||||||||||||||||||||||||| || | |||| | |||||||||  ||||    
T  46796031 tccgttagttttttaatgtctaaattttttgatatgattttaaccatttgattgcatgtccattgtatttaatagtgaaccgtcggcacctaattttttt 46795932  T
Q  222 cgtttatcatcatcttctcttttcttcttcctcatatct 260  Q
    |  || |||||||||||||| |||| |||||||||||||    
T  46795931 cacttttcatcatcttctctcttctccttcctcatatct 46795893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 43 - 255
Target Start/End: Original strand, 52137460 - 52137673
Alignment:
Q  43 tgtttacattttagtcccataactcgaaaaatcaacattttggtccctctt-gttttactccgtttgtcaaattgatcatttccgttagttttttaatgt 141  Q
    |||||||||||| ||||||||| | | |||| |||||||||||| |||||| ||||||||||||  |||||||| ||||| ||||||||||||| |||||    
T  52137460 tgtttacattttggtcccataaattgtaaaaccaacattttggt-cctcttggttttactccgtcggtcaaattcatcatctccgttagtttttcaatgt 52137558  T
Q  142 ctaaaacttttaatat-attttaaccatttgattgcatgtccattgtatttaacagcggaccgcccgcacctaa-taattttcgtttatcatcatcttct 239  Q
    |||||  |||| |||| ||||||||| |||||||||||||||||| || || | || | |||| | ||| |||| |  ||||| ||| ||||||||||||    
T  52137559 ctaaattttttgatatgattttaaccgtttgattgcatgtccattatactt-atagtgaaccgtcagcagctaattttttttcatttttcatcatcttct 52137657  T
Q  240 cttttcttcttcctca 255  Q
    || |||||||||||||    
T  52137658 ctcttcttcttcctca 52137673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 18 - 196
Target Start/End: Complemental strand, 26631326 - 26631147
Alignment:
Q  18 acttttggttccctacctaatttcttgtttacattttagtcccataactcgaaaaatcaacattttggtccctcttgttttactccgtttgtcaaattga 117  Q
    ||||||||| ||| |  |||||| || ||| |||||| ||| ||||||||| ||||||||||||||||| ||||||||||| ||||||| ||||| |||     
T  26631326 acttttggtcccccaagtaatttgttattttcattttggtctcataactcgtaaaatcaacattttggttcctcttgttttgctccgttagtcaatttgg 26631227  T
Q  118 tcatttccgttagttttttaatgtctaaaacttttaatat-attttaaccatttgattgcatgtccattgtatttaacag 196  Q
    ||   |||||| ||  |||||||||||||  |||| || | |||||||||| ||||||||||||| ||||||||||||||    
T  26631226 tcccctccgtttgtcctttaatgtctaaattttttgatttgattttaaccacttgattgcatgtctattgtatttaacag 26631147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 125 - 256
Target Start/End: Original strand, 47667291 - 47667423
Alignment:
Q  125 cgttagttttttaatgtctaaaacttttaatat-attttaaccatttgattgcatgtccattgtatttaacagcggaccgcccgcacctaataattttcg 223  Q
    ||||||||||||||||||||||  |||| || | |||||||||||||||||||||||||||||||| ||| || | |||| | |||||||||  |||||     
T  47667291 cgttagttttttaatgtctaaatttttttatgtgattttaaccatttgattgcatgtccattgtatctaatagtgaaccgtcagcacctaatttttttca 47667390  T
Q  224 tttatcatcatcttctcttttcttcttcctcat 256  Q
     || |||||||||||||| ||||||||||||||    
T  47667391 cttttcatcatcttctctcttcttcttcctcat 47667423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 51 - 275
Target Start/End: Complemental strand, 44500058 - 44499838
Alignment:
Q  51 ttttagtcccataactcgaaaaatcaacattttggtccctcttgttttactccgtttgtcaaattgatcatttccgttagttttttaatgtctaaaactt 150  Q
    |||| ||||||||||||  ||||||| |||||||||||||    |||| ||||||| ||||||||||||   ||||||||||| |||||||||| |  ||    
T  44500058 ttttggtcccataactcttaaaatcatcattttggtcccttaacttttgctccgttagtcaaattgatccactccgttagtttgttaatgtctatatttt 44499959  T
Q  151 ttaatat-attttaaccatttgattgcatgtccattgtatttaacagcggaccgcccgcacctaataattttcgtttatcatcatcttctcttttcttct 249  Q
    || || | ||||||||| |||||||||||||||||||||| | | || | |||| | |||||||||  ||||  ||| |||||||||||||| |||||||    
T  44499958 ttgatttgattttaaccgtttgattgcatgtccattgtatct-atagtgaaccgtcagcacctaat-ttttttatttttcatcatcttctctcttcttct 44499861  T
Q  250 tcctcatatctatacatcaacatttt 275  Q
    |||||| ||||||  |||||||||||    
T  44499860 tcctca-atctat--atcaacatttt 44499838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 18 - 203
Target Start/End: Original strand, 35348806 - 35348992
Alignment:
Q  18 acttttggttccctacctaatttcttgtttacattttagtcccataactcgaaaaatcaacattttggtccctcttgttttactccgtttgtcaaattga 117  Q
    ||||||||| || ||  |||||| |||||| |||||| ||||||||||| | ||||||||| |||| |||||||||||||| || |||  ||||| ||      
T  35348806 acttttggtcccttaagtaatttgttgttttcattttggtcccataacttgtaaaatcaacgttttagtccctcttgttttgcttcgtcagtcaatttag 35348905  T
Q  118 tcatttccgttagttttttaatgtctaaaacttttaatat-attttaaccatttgattgcatgtccattgtatttaacagcggaccg 203  Q
    ||   |||||||| |||||||||||||||| |||| || | ||||||||||||||||||  |||||||||  ||||| || ||||||    
T  35348906 tcccctccgttagctttttaatgtctaaaatttttgatttgattttaaccatttgattgagtgtccattgcgtttaatagtggaccg 35348992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 118 - 256
Target Start/End: Original strand, 38554035 - 38554174
Alignment:
Q  118 tcatttccgttagttttttaatgtctaaaacttttaatat-attttaaccatttgattgcatgtccattgtatttaacagcggaccgcccgcacctaata 216  Q
    |||| ||| ||||||||||||||||||||  |||| |||| |||||||||||||||| ||| ||||||||||||||| || | |||| |  ||| ||||     
T  38554035 tcatctccattagttttttaatgtctaaattttttgatatgattttaaccatttgatcgcacgtccattgtatttaatagtgaaccgtcatcacttaatt 38554134  T
Q  217 attttcgtttatcatcatcttctcttttcttcttcctcat 256  Q
     |||||  || |||||||||||||| ||||||||||||||    
T  38554135 tttttcacttttcatcatcttctctcttcttcttcctcat 38554174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 18 - 191
Target Start/End: Complemental strand, 1521301 - 1521118
Alignment:
Q  18 acttttggttccctacctaatttcttgtttacattttagtcccataactcgaaaaatcaacattttggtccctcttgttttactccgtttgtcaaattga 117  Q
    ||||||||| | ||| ||||||| |||||| ||||||  |||||||| ||| ||||||||||||||||||||||   |||||||||||| ||||| |||     
T  1521301 acttttggtcctctaactaatttgttgttttcattttgatcccataattcgtaaaatcaacattttggtccctcaacttttactccgttagtcaatttgg 1521202  T
Q  118 tcatt----------tccgttagttttttaatgtctaaaacttttaatatattttaaccatttgattgcatgtccattgtattt 191  Q
    ||  |          | ||||| ||||||||||||||||  ||||| | ||||||||||||||||||| ||||||| |||||||    
T  1521201 tccctcaacttttacttcgttaattttttaatgtctaaattttttattttattttaaccatttgattgtatgtccaatgtattt 1521118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 18 - 241
Target Start/End: Original strand, 39056434 - 39056658
Alignment:
Q  18 acttttggttccctacctaatttcttgtttacattttagtcccataactcgaaaaatcaacattttggtccctcttgttttactccgtttgtcaaattga 117  Q
    ||||||||| || ||  |||||| |||||| |||||| ||| ||||| | | ||||||||| |||| |||||||||||||| ||||||| ||||| ||      
T  39056434 acttttggtcccttaagtaatttgttgttttcattttggtctcataatttgtaaaatcaacgttttagtccctcttgttttgctccgttagtcaatttag 39056533  T
Q  118 tcatttccgttagttttttaatgtctaaaacttttaatat-attttaaccatttgattgcatgtccattgtatttaacagcggaccgcccgcacctaata 216  Q
    |     ||||||| |||||||||||||||| |||| || | ||||||||||||||||||  |||||||||  ||||| || |||||| |  ||||||||     
T  39056534 ttcccaccgttagctttttaatgtctaaaatttttgatttgattttaaccatttgattgagtgtccattgcgtttaatagtggaccgtcaacacctaatt 39056633  T
Q  217 attttcgtttatcatcatcttctct 241  Q
     |||||  ||  |||||||||||||    
T  39056634 gttttcactttccatcatcttctct 39056658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 127 - 194
Target Start/End: Original strand, 41348354 - 41348422
Alignment:
Q  127 ttagttttttaatgtctaaaacttttaatat-attttaaccatttgattgcatgtccattgtatttaac 194  Q
    ||||||||||||||| ||||| |||| |||| ||||||| |||||||||||||||||||||||||||||    
T  41348354 ttagttttttaatgtataaaatttttgatatgattttaatcatttgattgcatgtccattgtatttaac 41348422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 118 - 256
Target Start/End: Complemental strand, 29665584 - 29665445
Alignment:
Q  118 tcatttccgttagttttttaatgtctaaaacttttaatat-attttaaccatttgattgcatgtccattgtatttaacagcggaccgcccgcacctaata 216  Q
    |||| ||||||| ||||||||||||||||  |||| || | |||||||||||||||||||||||||||||||| |||  | | |||| |   |||||||     
T  29665584 tcatctccgttaattttttaatgtctaaattttttgatgtgattttaaccatttgattgcatgtccattgtatctaattgtgaaccgtcaatacctaatt 29665485  T
Q  217 attttcgtttatcatcatcttctcttttcttcttcctcat 256  Q
     |||||  || || ||||||||||| ||||||||||||||    
T  29665484 tttttcacttttcttcatcttctctcttcttcttcctcat 29665445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 44 - 185
Target Start/End: Complemental strand, 8363470 - 8363328
Alignment:
Q  44 gtttacattttagtcccataactcgaaaaatcaacattttggtccctcttgttttactccgtttgtcaaattgatcatttccgttagttttttaatgtct 143  Q
    ||||||||||| |||| |||| | | ||||   |||||||||||||| | ||||| ||||||| ||||||||||||   ||||||||||||||||||| |    
T  8363470 gtttacattttggtcctataaattgtaaaactcacattttggtccctttggttttgctccgttagtcaaattgatcccctccgttagttttttaatgttt 8363371  T
Q  144 aaaacttttaatat-attttaaccatttgattgcatgtccatt 185  Q
    |||| |||| |||| || ||   | ||||||||||||||||||    
T  8363370 aaaatttttgatatgatattcgtcgtttgattgcatgtccatt 8363328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 44 - 107
Target Start/End: Original strand, 26491452 - 26491515
Alignment:
Q  44 gtttacattttagtcccataactcgaaaaatcaacattttggtccctcttgttttactccgttt 107  Q
    ||||| ||||| ||| ||||||||| |||||||||||||||||||||||| |||| ||||||||    
T  26491452 gtttatattttggtctcataactcgtaaaatcaacattttggtccctcttattttgctccgttt 26491515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 118 - 190
Target Start/End: Complemental strand, 307815 - 307742
Alignment:
Q  118 tcatttccgttagttttttaatgtctaaaacttttaatat-attttaaccatttgattgcatgtccattgtatt 190  Q
    |||| |||||| |||||||||||| ||||  |||| |||| ||||||||||| |||||||||||||||||||||    
T  307815 tcatctccgttggttttttaatgtttaaattttttgatatgattttaaccatatgattgcatgtccattgtatt 307742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 1519820 - 1519893
Alignment:
Q  18 acttttggttccctacctaatttcttgtttacattttagtcccataactcgaaaaatcaacattttggtccctc 91  Q
    ||||||||| ||||| ||||||| | |||| |||||| ||||||||| ||| ||||||||||| ||||||||||    
T  1519820 acttttggtcccctaactaatttgtcgttttcattttggtcccataattcgtaaaatcaacatattggtccctc 1519893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 77 - 181
Target Start/End: Original strand, 26495190 - 26495295
Alignment:
Q  77 acattttggtccctcttgttttactccgtttgtcaaattgatcatttccgttagttttttaatgtctaaaacttttaatat-attttaaccatttgattg 175  Q
    |||||||||||||  | ||||| ||||||  ||||||||||||   ||||||||||||||||||| ||||| |||| |||| || ||| || ||||||||    
T  26495190 acattttggtccccttggttttgctccgtcagtcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgatattagccgtttgattg 26495289  T
Q  176 catgtc 181  Q
    ||||||    
T  26495290 catgtc 26495295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 125 - 189
Target Start/End: Complemental strand, 56001271 - 56001207
Alignment:
Q  125 cgttagttttttaatgtctaaaacttttaatatattttaaccatttgattgcatgtccattgtat 189  Q
    |||||||||||||||||||||   |||||    ||||||||||||||||||||||||||||||||    
T  56001271 cgttagttttttaatgtctaatttttttatgtgattttaaccatttgattgcatgtccattgtat 56001207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 127 - 189
Target Start/End: Original strand, 3528305 - 3528368
Alignment:
Q  127 ttagttttttaatgtctaaaacttttaatat-attttaaccatttgattgcatgtccattgtat 189  Q
    |||||||||||||||||||   |||| || | ||||||||||||||||||||||||||||||||    
T  3528305 ttagttttttaatgtctaattttttttatgtgattttaaccatttgattgcatgtccattgtat 3528368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 91
Target Start/End: Original strand, 26629824 - 26629873
Alignment:
Q  42 ttgtttacattttagtcccataactcgaaaaatcaacattttggtccctc 91  Q
    |||||| |||||| ||||||||||||  ||||||||||||||||||||||    
T  26629824 ttgttttcattttggtcccataactcataaaatcaacattttggtccctc 26629873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 185
Target Start/End: Complemental strand, 36244797 - 36244706
Alignment:
Q  95 ttttactccgtttgtcaaattgatcatttccgttagttttttaatgtctaaaacttttaatat-attttaaccatttgattgcatgtccatt 185  Q
    |||| ||||||  ||||||||||||   ||||||||||||||||||| |||||  ||| |||| || ||| || ||||||||||||||||||    
T  36244797 ttttgctccgtcagtcaaattgatcccctccgttagttttttaatgtttaaaatgtttgatatgatattagccgtttgattgcatgtccatt 36244706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 185
Target Start/End: Original strand, 56156970 - 56157112
Alignment:
Q  44 gtttacattttagtcccataactcgaaaaatcaacattttggtccctcttgttttactccgtttgtcaaattgatcatttccgttagttttttaatgtct 143  Q
    ||||||||||| ||||||||| | | ||||   ||||||||||| |  | ||||| ||||||   ||||||||| |   ||||||||||||||||||| |    
T  56156970 gtttacattttggtcccataaattgtaaaactcacattttggtctccttggttttgctccgtcaatcaaattgaccccctccgttagttttttaatgttt 56157069  T
Q  144 aaaacttttaatat-attttaaccatttgattgcatgtccatt 185  Q
    |||| |||| |||| || ||| || |||| |||||||||||||    
T  56157070 aaaatttttgatatgatattagccgtttggttgcatgtccatt 56157112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 88; Significance: 8e-42; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 88; E-Value: 8e-42
Query Start/End: Original strand, 17 - 215
Target Start/End: Complemental strand, 43442871 - 43442672
Alignment:
Q  17 aacttttggttccctacctaatttcttgtttacattttagtcccataactcgaaaaatcaacattttggtccctcttgttttactccgtttgtcaaattg 116  Q
    |||||||||| |||||  |||||| |||||| ||| || ||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||| |||    
T  43442871 aacttttggtcccctaagtaatttgttgttttcatattggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccgttagtcaatttg 43442772  T
Q  117 atcatttccgttagttttttaatgtctaaaacttttaatat-attttaaccatttgattgcatgtccattgtatttaacagcggaccgcccgcacctaat 215  Q
     ||   ||||||||| ||||||||||||||  |||| || | |||||||| |||||||||||||||| ||||||||||||| | |||| | |||||||||    
T  43442771 gtcccctccgttagtcttttaatgtctaaattttttgatttgattttaacaatttgattgcatgtccgttgtatttaacagtgaaccgtcagcacctaat 43442672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 123 - 260
Target Start/End: Complemental strand, 28326395 - 28326260
Alignment:
Q  123 tccgttagttttttaatgtctaaaacttttaatat-attttaaccatttgattgcatgtccattgtatttaacagcggaccgcccgcacctaataatttt 221  Q
    ||||||||||||||||||||||||  ||||||||| |||||||||||||||||||||||||||| ||||||| || | |||| | |||||||||  ||||    
T  28326395 tccgttagttttttaatgtctaaattttttaatatgattttaaccatttgattgcatgtccattatatttaatagtgaaccgtcggcacctaattttttt 28326296  T
Q  222 cgtttatcatcatcttctcttttcttcttcctcatatct 260  Q
    | |||    ||||||||||| |||| |||||||||||||    
T  28326295 cattt---ttcatcttctctcttctccttcctcatatct 28326260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 123 - 260
Target Start/End: Original strand, 41515107 - 41515245
Alignment:
Q  123 tccgttagttttttaatgtctaaaacttttaatat-attttaaccatttgattgcatgtccattgtatttaacagcggaccgcccgcacctaataatttt 221  Q
    ||||||| ||||||||||||||||  |||| |||| |||||||||||||||||||||||||||| ||||||| || | |||| | |||||||||  ||||    
T  41515107 tccgttaattttttaatgtctaaagttttttatatgattttaaccatttgattgcatgtccattatatttaatagtgaaccgtcggcacctaattttttt 41515206  T
Q  222 cgtttatcatcatcttctcttttcttcttcctcatatct 260  Q
    |  || |||| ||||||||| |||| |||||||||||||    
T  41515207 cacttttcataatcttctctcttctccttcctcatatct 41515245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 123 - 260
Target Start/End: Complemental strand, 17288247 - 17288107
Alignment:
Q  123 tccgttagttttttaatgtctaaaacttttaatat-attttaaccatttgattgcatgtccattgtatttaacagcggaccgcccgcacctaataatttt 221  Q
    ||||||||||||||||||||||||  |||| |||| |||||||| ||||||||||||||||||||||||||| || | |||| | |||||||||  ||||    
T  17288247 tccgttagttttttaatgtctaaattttttgatatgattttaactatttgattgcatgtccattgtatttaatagtgaaccgtcagcacctaattttttt 17288148  T
Q  222 --cgtttatcatcatcttctcttttcttcttcctcatatct 260  Q
      |  || |||||||||||||| |||| |||||||||||||    
T  17288147 tccacttttcatcatcttctctcttctccttcctcatatct 17288107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 35 - 185
Target Start/End: Complemental strand, 35296908 - 35296757
Alignment:
Q  35 taatttcttgtttacattttagtcccataactcgaaaaatcaacattttggtccctcttgttttactccgtttgtcaaattgatcatttccgttagtttt 134  Q
    |||||| | ||||||||||| |||| |||| | | ||||   |||||||||| ||  | ||||| ||||||| |||||||||||||| ||||||| ||||    
T  35296908 taatttgtagtttacattttggtcctataaattgtaaaactcacattttggtacccttggttttgctccgttagtcaaattgatcatctccgttaatttt 35296809  T
Q  135 ttaatgtctaaaacttttaatat-attttaaccatttgattgcatgtccatt 185  Q
    ||||||||||||  |||| |||| ||||||||| ||||||||||||||||||    
T  35296808 ttaatgtctaaattttttgatatgattttaaccgtttgattgcatgtccatt 35296757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 18 - 241
Target Start/End: Original strand, 10955854 - 10956078
Alignment:
Q  18 acttttggttccctacctaatttcttgtttacattttagtcccataactcgaaaaatcaacattttggtccctcttgttttactccgtttgtcaaattga 117  Q
    ||||||||| || ||  |||||| |||||| ||||||  | ||||||||   ||||||||| |||| |||||||||||||| ||||||| ||||| ||      
T  10955854 acttttggtcccttaagtaatttgttgttttcattttgattccataacttataaaatcaacgttttagtccctcttgttttgctccgttagtcaatttag 10955953  T
Q  118 tcatttccgttagttttttaatgtctaaaacttttaatat-attttaaccatttgattgcatgtccattgtatttaacagcggaccgcccgcacctaata 216  Q
    ||   |||||||| |||||||||||||||| |||| || | ||||||||||||||||||  |||||||||  ||||| || ||||||   |||||||||     
T  10955954 tcccctccgttagatttttaatgtctaaaatttttgatttgattttaaccatttgattgagtgtccattgcgtttaatagtggaccgttagcacctaatt 10956053  T
Q  217 attttcgtttatcatcatcttctct 241  Q
     |||||  ||  |||||||||||||    
T  10956054 gttttcactttccatcatcttctct 10956078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 60 - 191
Target Start/End: Original strand, 666777 - 666909
Alignment:
Q  60 cataactcgaaaaatcaacattttggtccctcttgttttactccgtttgtcaaattgatcatttccgttagttttttaatgtctaaaacttttaatat-a 158  Q
    ||||||||  ||||| || |||| ||||||||||||||| ||||||| ||||| ||| ||   ||||||||| |||||||||| |||  |||| || | |    
T  666777 cataactcataaaattaatatttcggtccctcttgttttgctccgttagtcaatttggtcccctccgttagtattttaatgtcgaaattttttgatttga 666876  T
Q  159 ttttaaccatttgattgcatgtccattgtattt 191  Q
    |||||||||||| |||||||||| ||| |||||    
T  666877 ttttaaccatttaattgcatgtctattatattt 666909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 123 - 185
Target Start/End: Original strand, 32653577 - 32653640
Alignment:
Q  123 tccgttagttttttaatgtctaaaacttttaatat-attttaaccatttgattgcatgtccatt 185  Q
    |||||||||||||||||| |||||| |||| |||| ||||||||| ||||||||||||||||||    
T  32653577 tccgttagttttttaatgactaaaatttttgatatcattttaaccgtttgattgcatgtccatt 32653640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 123 - 189
Target Start/End: Complemental strand, 45721771 - 45721704
Alignment:
Q  123 tccgttagttttttaatgtctaaaacttttaatat-attttaaccatttgattgcatgtccattgtat 189  Q
    ||||||||||||||||||||||||  |||| || | ||||||||||||||||||||||| ||||||||    
T  45721771 tccgttagttttttaatgtctaaatttttttatgtgattttaaccatttgattgcatgttcattgtat 45721704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 10957261 - 10957189
Alignment:
Q  18 acttttggttccctacctaatttcttgtttacattttagtcccataactcgaaaaatcaacattttggtccct 90  Q
    ||||||||| |||||  |||||| |||||| |||||| ||||||||||||| ||||| ||| |||||||||||    
T  10957261 acttttggtcccctaagtaatttgttgttttcattttggtcccataactcgtaaaattaacgttttggtccct 10957189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 102 - 193
Target Start/End: Complemental strand, 26146730 - 26146638
Alignment:
Q  102 ccgtttgtcaaattgatcatttccgttagttttttaatgtctaaaacttttaatat-attttaaccatttgattgcatgtccattgtatttaa 193  Q
    ||||| ||||||||||||   ||||||| ||||||||||||||||  |||| |||| ||||||||||   |||||||||||||||||| ||||    
T  26146730 ccgttagtcaaattgatcccctccgttatttttttaatgtctaaactttttgatatgattttaaccacccgattgcatgtccattgtagttaa 26146638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 44 - 185
Target Start/End: Complemental strand, 41329551 - 41329409
Alignment:
Q  44 gtttacattttagtcccataactcgaaaaatcaacattttggtccctcttg-ttttactccgtttgtcaaattgatcatttccgttagttttttaatgtc 142  Q
    ||||||||||| |||| |||| | | ||||   ||||||||||||| |||| |||||||||||  ||||||||||||   |||||||| ||||||||||     
T  41329551 gtttacattttggtcctataaattgtaaaactcacattttggtccc-cttgattttactccgtcagtcaaattgatcccctccgttagatttttaatgtt 41329453  T
Q  143 taaaacttttaatat-attttaaccatttgattgcatgtccatt 185  Q
    ||||  |||| || | || |||||| ||||||||||||||||||    
T  41329452 taaattttttgatgtgatattaaccgtttgattgcatgtccatt 41329409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 98
Target Start/End: Original strand, 35295734 - 35295788
Alignment:
Q  44 gtttacattttagtcccataactcgaaaaatcaacattttggtccctcttgtttt 98  Q
    ||||||||||| ||||||||||||| ||| ||||| |||| ||||||||||||||    
T  35295734 gtttacattttggtcccataactcgtaaagtcaacgttttagtccctcttgtttt 35295788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 113
Target Start/End: Complemental strand, 669469 - 669400
Alignment:
Q  44 gtttacattttagtcccataactcgaaaaatcaacattttggtccctcttgttttactccgtttgtcaaa 113  Q
    |||| |||||| ||||||||| ||| ||||||||||||| ||||||| || |||| || |||||||||||    
T  669469 gttttcattttggtcccataattcgtaaaatcaacatttcggtcccttttattttgcttcgtttgtcaaa 669400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 26135650 - 26135722
Alignment:
Q  18 acttttggttccctacctaatttcttgtttacattttagtcccataactcgaaaaatcaacattttggtccct 90  Q
    ||||||||| ||||| |||||||  ||||| |||||| |||||||||||   ||||||||| |||||||||||    
T  26135650 acttttggtcccctaactaatttgatgttttcattttggtcccataacttctaaaatcaacgttttggtccct 26135722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 192
Target Start/End: Complemental strand, 29589269 - 29589202
Alignment:
Q  126 gttagttttttaatgtctaaaacttttaatat-attttaaccatttgattgcatgtccattgtattta 192  Q
    |||||||||||||||| ||||| |||| || | ||||||||||||||||| ||| |||||| ||||||    
T  29589269 gttagttttttaatgtttaaaatttttgatttgattttaaccatttgatttcatatccattatattta 29589202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 146
Target Start/End: Complemental strand, 44376762 - 44376667
Alignment:
Q  51 ttttagtcccataactcgaaaaatcaacattttggtccctcttgttttactccgtttgtcaaattgatcatttccgttagttttttaatgtctaaa 146  Q
    |||| |||||||||||   ||||||| |||||||||||||    |||| |||| || |||||||| |||   ||||||||||||||||||||||||    
T  44376762 ttttggtcccataacttttaaaatcatcattttggtcccttaacttttgctccattagtcaaattaatccactccgttagttttttaatgtctaaa 44376667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 146
Target Start/End: Complemental strand, 44385629 - 44385534
Alignment:
Q  51 ttttagtcccataactcgaaaaatcaacattttggtccctcttgttttactccgtttgtcaaattgatcatttccgttagttttttaatgtctaaa 146  Q
    |||| |||||||||||   ||||||| |||||||||||||    |||| |||| || |||||||| |||   ||||||||||||||||||||||||    
T  44385629 ttttggtcccataacttttaaaatcatcattttggtcccttaacttttgctccattagtcaaattaatccactccgttagttttttaatgtctaaa 44385534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 184
Target Start/End: Original strand, 14107943 - 14108005
Alignment:
Q  123 tccgttagttttttaatgtctaaaacttttaatat-attttaaccatttgattgcatgtccat 184  Q
    |||||||||||||| |||||||| | ||||||||| ||| ||||| |||||||||| ||||||    
T  14107943 tccgttagttttttgatgtctaatatttttaatataattataaccgtttgattgcaggtccat 14108005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 184
Target Start/End: Original strand, 14417900 - 14417962
Alignment:
Q  123 tccgttagttttttaatgtctaaaacttttaatat-attttaaccatttgattgcatgtccat 184  Q
    |||||||||||||| |||||||| | ||||||||| ||| ||||| |||||||||| ||||||    
T  14417900 tccgttagttttttgatgtctaatatttttaatataattataaccgtttgattgcaggtccat 14417962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 194
Target Start/End: Original strand, 25532257 - 25532327
Alignment:
Q  125 cgttagttttttaatgtctaaaacttttaatat-attttaaccatttgattgcatgtccattgtatttaac 194  Q
    ||||||||||||||||| ||| | |||| |||| |||| ||||||| ||||||| ||||||| ||||||||    
T  25532257 cgttagttttttaatgtttaatatttttgatatgatttcaaccattcgattgcaggtccattatatttaac 25532327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 260
Target Start/End: Original strand, 30333424 - 30333526
Alignment:
Q  158 attttaaccatttgattgcatgtccattgtatttaacagcggaccgcccgcacctaataattttcgtttatcatcatcttctcttttcttcttcctcata 257  Q
    |||||||| ||| |||||| ||||| ||||||||||||| | || | | |||||||||  |||||   | ||||||| |||||| ||||||||||||| |    
T  30333424 attttaacaattagattgcttgtcctttgtatttaacagtgtactgtcagcacctaatttttttcacctttcatcattttctctcttcttcttcctcaaa 30333523  T
Q  258 tct 260  Q
    |||    
T  30333524 tct 30333526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 86; Significance: 1e-40; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 44 - 260
Target Start/End: Original strand, 42793734 - 42793951
Alignment:
Q  44 gtttacattttagtcccataactcgaaaaatcaacattttggtccctcttgttttactccgtttgtcaaattgatcatttccgttagttttttaatgtct 143  Q
    ||||| ||||| ||||||||| | | ||||| ||||||||||||||||||||||| ||||||| ||||||  | ||   || |||| |||||||||||||    
T  42793734 gtttatattttggtcccataaattgtaaaattaacattttggtccctcttgttttgctccgttagtcaaaaaggtcccctctgttaattttttaatgtct 42793833  T
Q  144 aaaacttttaatat-attttaaccatttgattgcatgtccattgtatttaacagcggaccgcccgcacctaataattttcgtttatcatcatcttctctt 242  Q
    ||||||||| |||| |||||||||||| |||||||||||||||||| |||| || | |||  |  ||||||||  |||||| || ||||||||||||||     
T  42793834 aaaacttttgatatgattttaaccattggattgcatgtccattgtaattaatagtgaaccatcgacacctaatttttttcgcttttcatcatcttctctc 42793933  T
Q  243 ttcttcttcctcatatct 260  Q
    ||||||||||||||||||    
T  42793934 ttcttcttcctcatatct 42793951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 35 - 193
Target Start/End: Complemental strand, 43203370 - 43203211
Alignment:
Q  35 taatttcttgtttacattttagtcccataactcgaaaaatcaacattttggtccctcttgttttactccgtttgtcaaattgatcatttccgttagtttt 134  Q
    |||||| || ||| |||||| ||||||||||||| |||||||||||||  ||||||||| |||| ||||||  ||||| ||| ||   ||||||||||||    
T  43203370 taatttgttattttcattttggtcccataactcgtaaaatcaacatttccgtccctcttattttgctccgtcagtcaatttggtcccctccgttagtttt 43203271  T
Q  135 ttaatgtctaaaacttttaatat-attttaaccatttgattgcatgtccattgtatttaa 193  Q
    ||||||||||||  |||| || | ||||||| ||||||||||||||||||||||||||||    
T  43203270 ttaatgtctaaattttttgatttaattttaaacatttgattgcatgtccattgtatttaa 43203211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 35 - 196
Target Start/End: Original strand, 31844394 - 31844556
Alignment:
Q  35 taatttcttgtttacattttagtcccataactcgaaaaatcaacattttggtccctcttgttttactccgtttgtcaaattgatcatttccgttagtttt 134  Q
    |||||| |||||| |||||||||||| ||||||| ||||| ||||||||||||||||||||||| ||||||| ||||| ||| ||   |||||| ||  |    
T  31844394 taatttgttgttttcattttagtcccgtaactcgtaaaattaacattttggtccctcttgttttgctccgttagtcaatttggtcccctccgtttgtcct 31844493  T
Q  135 ttaatgtctaaaacttttaatat-attttaaccatttgattgcatgtccattgtatttaacag 196  Q
    ||||| ||||||| |||| || | |||||||||| ||||||||||||| |||||| |||||||    
T  31844494 ttaatttctaaaatttttgatttgattttaaccacttgattgcatgtctattgtaattaacag 31844556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 34 - 277
Target Start/End: Original strand, 24191402 - 24191642
Alignment:
Q  34 ctaatttcttgtttacattttagtcccataactcgaaaaatcaacattttggtccctcttgttttactccgtttgtcaaattgatcatttccgttagttt 133  Q
    ||||||||  |||| | |||| ||||||||||||  ||||||| |||||||||| ||    |||| ||| |||  |||||||||||   |||||||||||    
T  24191402 ctaatttcgagttttcgttttggtcccataactcttaaaatcatcattttggtctcttaacttttgctctgttactcaaattgatccactccgttagttt 24191501  T
Q  134 tttaatgtctaaaacttttaatat-attttaaccatttgattgcatgtccattgtatttaacagcggaccgcccgcacctaataattttcgtttatcatc 232  Q
     ||||||||||||  |||| || | ||||||||| |||||||||||||||||||||| | | || | |||| | |||||||||  ||||  ||| |||||    
T  24191502 gttaatgtctaaattttttgatttgattttaaccgtttgattgcatgtccattgtatct-atagtgaaccgtcagcacctaattttttttatttttcatc 24191600  T
Q  233 atcttctcttttcttcttcctcatatctatacatcaacattttcc 277  Q
    ||||||||| ||||||||||||| ||||||  |||||||||||||    
T  24191601 atcttctctcttcttcttcctca-atctat--atcaacattttcc 24191642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 123 - 260
Target Start/End: Original strand, 38096 - 38234
Alignment:
Q  123 tccgttagttttttaatgtctaaaacttttaatat-attttaaccatttgattgcatgtccattgtatttaacagcggaccgcccgcacctaataatttt 221  Q
    ||||||||||||| ||||||||||  |||| |||| ||||||||||||| ||||||||||||||||||||||||| | |||| | |||||||||  ||||    
T  38096 tccgttagttttt-aatgtctaaattttttgatatgattttaaccatttaattgcatgtccattgtatttaacagtgaaccgtcagcacctaattttttt 38194  T
Q  222 -cgtttatcatcatcttctcttttcttcttcctcatatct 260  Q
     |  || |||||||||||||| |||| |||||||||||||    
T  38195 ccacttttcatcatcttctctcttctccttcctcatatct 38234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 18 - 193
Target Start/End: Complemental strand, 24306232 - 24306056
Alignment:
Q  18 acttttggttccctacctaatttcttgtttacattttagtcccataactcgaaaaatcaacattttggtccctcttgttttactccgtttgtcaaattga 117  Q
    |||||||||||||||  ||||||||||||| |||||| ||||||||||||| |||||||| |||||||||| |     ||| | ||||| || |||  |     
T  24306232 acttttggttccctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaatattttggtcctttaacgtttgccccgttagttaaaaagg 24306133  T
Q  118 tcatttccgttagttttttaatgtctaaaacttttaatat-attttaaccatttgattgcatgtccattgtatttaa 193  Q
    ||  | ||||||||||||||||| |||||  |||| || | ||||||||||||| |||| || ||||||||||||||    
T  24306132 tccatgccgttagttttttaatgcctaaatattttgatttaattttaaccatttaattggatctccattgtatttaa 24306056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 19 - 113
Target Start/End: Original strand, 38697878 - 38697972
Alignment:
Q  19 cttttggttccctacctaatttcttgtttacattttagtcccataactcgaaaaatcaacattttggtccctcttgttttactccgtttgtcaaa 113  Q
    |||||||| |||||  ||||||  | |||||||||| || |||||||| | ||||||||||||||||||||||||||||| ||||||| ||||||    
T  38697878 cttttggtcccctaagtaattttctatttacattttggttccataacttgtaaaatcaacattttggtccctcttgttttgctccgttagtcaaa 38697972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 43202105 - 43202178
Alignment:
Q  18 acttttggttccctacctaatttcttgtttacattttagtcccataactcgaaaaatcaacattttggtccctc 91  Q
    ||||||| | |||||  |||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  43202105 acttttgatcccctaagtaatttgttgttttcattttagtcccataactcgtaaaatcaacattttggtccctc 43202178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 123 - 189
Target Start/End: Complemental strand, 39516502 - 39516435
Alignment:
Q  123 tccgttagttttttaatgtctaaaacttttaatat-attttaaccatttgattgcatgtccattgtat 189  Q
    ||||||||||||||||||||||||  |||| || | ||||||||||||||||||||||||||||||||    
T  39516502 tccgttagttttttaatgtctaaattttttcatgtgattttaaccatttgattgcatgtccattgtat 39516435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 126 - 194
Target Start/End: Complemental strand, 22621136 - 22621067
Alignment:
Q  126 gttagttttttaatgtctaaaacttttaatat-attttaaccatttgattgcatgtccattgtatttaac 194  Q
    |||||||||||||||| ||||| | || |||| ||||||| |||||||||||||||||||||||||||||    
T  22621136 gttagttttttaatgtataaaattcttgatatgattttaatcatttgattgcatgtccattgtatttaac 22621067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 123 - 189
Target Start/End: Original strand, 7770108 - 7770175
Alignment:
Q  123 tccgttagttttttaatgtctaaaacttttaatat-attttaaccatttgattgcatgtccattgtat 189  Q
    ||||||||||||||||||||||||  |||| || | |||||||||||||||||| |||||||||||||    
T  7770108 tccgttagttttttaatgtctaaatttttttatgtgattttaaccatttgattgtatgtccattgtat 7770175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 123 - 189
Target Start/End: Original strand, 7777785 - 7777852
Alignment:
Q  123 tccgttagttttttaatgtctaaaacttttaatat-attttaaccatttgattgcatgtccattgtat 189  Q
    ||||||||||||||||||||||||  |||| || | |||||||||||||||||| |||||||||||||    
T  7777785 tccgttagttttttaatgtctaaatttttttatgtgattttaaccatttgattgtatgtccattgtat 7777852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 118 - 194
Target Start/End: Original strand, 34616240 - 34616317
Alignment:
Q  118 tcatttccgttagttttttaatgtctaaaacttttaatat-attttaaccatttgattgcatgtccattgtatttaac 194  Q
    |||||||||||||||||||||||| ||| | ||||||||| |||| ||||||| ||||||| ||| ||| ||||||||    
T  34616240 tcatttccgttagttttttaatgtttaatatttttaatatgatttcaaccattcgattgcaggtctattatatttaac 34616317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 94 - 185
Target Start/End: Original strand, 9853652 - 9853744
Alignment:
Q  94 gttttactccgtttgtcaaattgatcatttccgttagttttttaatgtctaaaacttttaatat-attttaaccatttgattgcatgtccatt 185  Q
    ||||| ||||||  ||||||||||||   ||||||||||||||||| ||||||  |||| |||| ||||||||| ||||||||||| ||||||    
T  9853652 gttttgctccgtcagtcaaattgatcccctccgttagttttttaatatctaaattttttgatataattttaaccgtttgattgcatatccatt 9853744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 260
Target Start/End: Complemental strand, 45396020 - 45395883
Alignment:
Q  123 tccgttagttttttaatgtctaaaacttttaatat-attttaaccatttgattgcatgtccattgtatttaacagcggaccgcccgcacctaataatttt 221  Q
    ||||||||||| ||||||||| | | |||| |||  ||||||||| |||||||||||||||||||||| | | ||   |||  | |||||||||  ||||    
T  45396020 tccgttagtttcttaatgtctgatattttttatacgattttaaccgtttgattgcatgtccattgtatat-atagtaaaccatcggcacctaattttttt 45395922  T
Q  222 cgtttatcatcatcttctcttttcttcttcctcatatct 260  Q
    |  || ||||||||||| || ||||||||||||||||||    
T  45395921 cacttttcatcatcttccctcttcttcttcctcatatct 45395883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 91
Target Start/End: Complemental strand, 31845877 - 31845828
Alignment:
Q  42 ttgtttacattttagtcccataactcgaaaaatcaacattttggtccctc 91  Q
    |||||| |||||| ||||||||||||  ||||||||||||||||||||||    
T  31845877 ttgttttcattttggtcccataactcataaaatcaacattttggtccctc 31845828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 248
Target Start/End: Original strand, 24068472 - 24068553
Alignment:
Q  165 ccatttgattgcatgtccattgtatttaacagcggaccgcccgcacctaataattttcgtttatcatcatcttctcttttcttc 248  Q
    ||||||||||||||||||||||||| ||| || | |||| | |||||||||  |||||  | ||||||||||||||| ||||||    
T  24068472 ccatttgattgcatgtccattgtatctaatagtgaaccgtcagcacctaat--ttttcactgatcatcatcttctctcttcttc 24068553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 112
Target Start/End: Original strand, 28291330 - 28291398
Alignment:
Q  44 gtttacattttagtcccataactcgaaaaatcaacattttggtccctcttgttttactccgtttgtcaa 112  Q
    |||| |||||| ||||||||| ||| ||||||||||||| |||||||||| |||| || |||| |||||    
T  28291330 gttttcattttggtcccataattcgtaaaatcaacatttcggtccctcttattttgcttcgttagtcaa 28291398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 181
Target Start/End: Complemental strand, 36757221 - 36757166
Alignment:
Q  127 ttagttttttaatgtctaaaacttttaatat-attttaaccatttgattgcatgtc 181  Q
    ||||||||||||||||||||  |||| |||| ||||||||||||| ||||||||||    
T  36757221 ttagttttttaatgtctaaattttttgatatgattttaaccatttaattgcatgtc 36757166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 187
Target Start/End: Original strand, 38697192 - 38697335
Alignment:
Q  45 tttacattttagtcccataactcgaaaaatcaacattttggtccctcttgttttactccgtttgtcaaattgatcatttccgttagttttttaatgtcta 144  Q
    |||||||||| ||| ||||| |   |||| |||||||||||||||| || |||| |||| |  ||||||  | ||   ||||||| | ||||||||||||    
T  38697192 tttacattttggtctcataaattataaaaccaacattttggtcccttttattttgctccctcagtcaaaaaggtcccctccgttactattttaatgtcta 38697291  T
Q  145 aaacttttaatat-attttaaccatttgattgcatgtccattgt 187  Q
    |||||||| |||| | |||||||||| ||||  |||||||||||    
T  38697292 aaacttttgatatgaatttaaccattagattatatgtccattgt 38697335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 196
Target Start/End: Original strand, 16362530 - 16362604
Alignment:
Q  123 tccgttagttttttaatgtctaaaacttttaatat-attttaaccatttgattgcatgtccattgtatttaacag 196  Q
    ||||||||||||||||||||||| | |||| |||| |||| |||| || ||||||| || |||||||| ||||||    
T  16362530 tccgttagttttttaatgtctaatatttttgatatgatttcaaccgttcgattgcaggtacattgtatataacag 16362604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 17455059 - 17455128
Alignment:
Q  21 tttggttccctacctaatttcttgtttacattttagtcccataactcgaaaaatcaacattttggtccct 90  Q
    ||||||| |||| ||||||| |||||| |||||| ||| ||||| | | ||||||||| |||||||||||    
T  17455059 tttggtttcctaactaattttttgttttcattttggtcacataatttgtaaaatcaactttttggtccct 17455128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 82; Significance: 3e-38; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 44 - 260
Target Start/End: Original strand, 19397565 - 19397782
Alignment:
Q  44 gtttacattttagtcccataactcgaaaaatcaacattttggtccctcttgttttactccgtttgtcaaattgatcatttccgttagttttttaatgtct 143  Q
    ||||||||||| ||||||||| |   ||||  ||||||||||||||||| ||||| ||||||| |||| |  | ||  |||||||| |||||||||||||    
T  19397565 gtttacattttggtcccataaattttaaaactaacattttggtccctctcgttttgctccgttagtcataaaggtcccttccgttatttttttaatgtct 19397664  T
Q  144 aaaacttttaatata-ttttaaccatttgattgcatgtccattgtatttaacagcggaccgcccgcacctaataattttcgtttatcatcatcttctctt 242  Q
    ||||||||| ||||| ||||||||||| |||||||||||||||||| |||| || | || | |  ||||||||  |||||| || ||||||||||||||     
T  19397665 aaaacttttgatataattttaaccattggattgcatgtccattgtaattaatagtgaactgtcgacacctaatttttttcgcttttcatcatcttctctc 19397764  T
Q  243 ttcttcttcctcatatct 260  Q
    ||||||||||||||||||    
T  19397765 ttcttcttcctcatatct 19397782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 18 - 185
Target Start/End: Original strand, 1147758 - 1147926
Alignment:
Q  18 acttttggttccctacctaatttcttgtttacattttagtcccataactcgaaaaatcaacattttggtccctcttgttttactccgtttgtcaaattga 117  Q
    ||||||||| ||||| ||||||| |||||| ||||||||||||||||||   ||||||||| ||| |||||||      |  | ||||| ||||||||||    
T  1147758 acttttggtcccctaactaatttgttgttttcattttagtcccataacttctaaaatcaacgtttcggtcccttacaaatatcaccgttagtcaaattga 1147857  T
Q  118 tcatttccgttagttttttaatgtctaaaacttttaatat-attttaaccatttgattgcatgtccatt 185  Q
    ||   ||||||| ||||||||||||||||  |||| |||| |||||||||||  |||||||||||||||    
T  1147858 tcccctccgttatttttttaatgtctaaactttttgatatgattttaaccatccgattgcatgtccatt 1147926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 44 - 185
Target Start/End: Original strand, 28610057 - 28610199
Alignment:
Q  44 gtttacattttagtcccataactcgaaaaatcaacattttggtccctcttgttttactccgtttgtcaaattgatcatttccgttagttttttaatgtct 143  Q
    ||||||||||| ||||||||| | | |||||  |||||||||||||  | ||||| ||||||  ||||||||||||   ||||||||||||||||||| |    
T  28610057 gtttacattttggtcccataaattgtaaaattcacattttggtccccttggttttgctccgtcagtcaaattgatcccatccgttagttttttaatgttt 28610156  T
Q  144 aaaacttttaatat-attttaaccatttgattgcatgtccatt 185  Q
    |||| |||| |||| || ||| || ||||||||||||| ||||    
T  28610157 aaaatttttgatatgatattagccgtttgattgcatgttcatt 28610199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 98
Target Start/End: Original strand, 1309409 - 1309487
Alignment:
Q  20 ttttggttccctacctaatttcttgtttacattttagtcccataactcgaaaaatcaacattttggtccctcttgtttt 98  Q
    ||||||| |||||  |||||| |||||| ||||||||||  |||||||| ||||| |||||||||||||||||||||||    
T  1309409 ttttggtcccctaagtaatttgttgttttcattttagtcatataactcgtaaaattaacattttggtccctcttgtttt 1309487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 45 - 185
Target Start/End: Original strand, 4919863 - 4920004
Alignment:
Q  45 tttacattttagtcccataactcgaaaaatcaacattttggtccctcttgttttactccgtttgtcaaattgatcatttccgttagttttttaatgtcta 144  Q
    |||||| ||| ||||||||| |   |||||| |||||||||||||  | ||||| ||||||  ||||||||||||   ||| ||||||||||||  ||||    
T  4919863 tttacaatttggtcccataaattataaaatccacattttggtccccttggttttgctccgtcagtcaaattgatcccctccattagttttttaacatcta 4919962  T
Q  145 aaacttttaatat-attttaaccatttgattgcatgtccatt 185  Q
    ||  |||| |||| ||||||||| ||||||||||||||||||    
T  4919963 aattttttgatatgattttaaccgtttgattgcatgtccatt 4920004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 19 - 111
Target Start/End: Complemental strand, 19398906 - 19398814
Alignment:
Q  19 cttttggttccctacctaatttcttgtttacattttagtcccataactcgaaaaatcaacattttggtccctcttgttttactccgtttgtca 111  Q
    ||||||||||||||  ||||| |  ||||||||||| ||||||||| | | |||| | |||||||||||||||||||||| ||||||| ||||    
T  19398906 cttttggttccctaaataattaccggtttacattttggtcccataaattgtaaaacctacattttggtccctcttgttttgctccgttagtca 19398814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 35 - 98
Target Start/End: Complemental strand, 1310758 - 1310695
Alignment:
Q  35 taatttcttgtttacattttagtcccataactcgaaaaatcaacattttggtccctcttgtttt 98  Q
    |||||| |||||| ||||||| || ||||||||| ||||||||||||||||||||||| |||||    
T  1310758 taatttgttgttttcattttaatctcataactcgtaaaatcaacattttggtccctctcgtttt 1310695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 1149295 - 1149223
Alignment:
Q  18 acttttggttccctacctaatttcttgtttacattttagtcccataactcgaaaaatcaacattttggtccct 90  Q
    ||||||||| ||||| ||||||| |||||| |||||| |||||||||||   ||||||||| |||||||||||    
T  1149295 acttttggtcccctaactaatttgttgttttcattttggtcccataacttctaaaatcaacgttttggtccct 1149223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 205
Target Start/End: Complemental strand, 40174774 - 40174687
Alignment:
Q  118 tcatttccgttagttttttaatgtctaaaacttttaatat-attttaaccatttgattgcatgtccattgtatttaacagcggaccgcc 205  Q
    |||| ||||||||||||||||||| ||| | |||| |||| |||| ||||||| ||||||| ||||||| |||||||||| | ||||||    
T  40174774 tcatctccgttagttttttaatgt-taatattttttatatgatttcaaccattcgattgcaggtccattatatttaacagtgtaccgcc 40174687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 77 - 184
Target Start/End: Original strand, 45699597 - 45699705
Alignment:
Q  77 acattttggtccctcttgttttactccgtttgtcaaattgatcatttccgttagttttttaatgtctaaaacttttaatat-attttaaccatttgattg 175  Q
    ||||||| |||||| | ||||| ||||||  |||||||||| |   ||| ||||||||||||| ||||||  |||| |||| ||||||||  ||||||||    
T  45699597 acattttagtccctttggttttgctccgtcagtcaaattgaccccctccattagttttttaatatctaaattttttgatatgattttaactgtttgattg 45699696  T
Q  176 catgtccat 184  Q
    |||||||||    
T  45699697 catgtccat 45699705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 67
Target Start/End: Complemental strand, 102460 - 102414
Alignment:
Q  21 tttggttccctacctaatttcttgtttacattttagtcccataactc 67  Q
    |||||| ||||| |||||||||||||| |||||| ||||||||||||    
T  102460 tttggtcccctaactaatttcttgttttcattttggtcccataactc 102414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 191
Target Start/End: Original strand, 16289895 - 16289960
Alignment:
Q  127 ttagttttttaatgtctaaaacttttaatat-attttaaccatttgattgcatgtccattgtattt 191  Q
    ||||||||||||||||||||| |||| || | ||||||  |||||||| |||||||| ||||||||    
T  16289895 ttagttttttaatgtctaaaattttttatttgattttactcatttgatcgcatgtccgttgtattt 16289960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 1e-28; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 123 - 311
Target Start/End: Complemental strand, 10339994 - 10339812
Alignment:
Q  123 tccgttagttttttaatgtctaaaacttttaatat-attttaaccatttgattgcatgtccattgtatttaacagcggaccgcccgcacctaataatttt 221  Q
    ||||||||||||||||||||||||  |||| || | |||| ||||||||||||| |||||||||||||||||||| | |||| | |||| ||||  ||||    
T  10339994 tccgttagttttttaatgtctaaattttttgatttgatttgaaccatttgattgaatgtccattgtatttaacagtgaaccgtcagcacataattttttt 10339895  T
Q  222 cgtttatcatcatcttctcttttcttcttcctcatatctatacatcaacattttccaaaatttcttttctttccaatatacaaatccaaa 311  Q
    |  || |||||||||||||   |||||||||||||||||||  ||||||||||  | | |||| |||||||||||| |||||||||||||    
T  10339894 cacttttcatcatcttctc---tcttcttcctcatatctat--atcaacattt--ctagattttttttctttccaaaatacaaatccaaa 10339812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 126 - 307
Target Start/End: Complemental strand, 10301817 - 10301640
Alignment:
Q  126 gttagttttttaatgtctaaaacttttaatat-attttaaccatttgattgcatgtccattgtatttaacagcggaccgcccgcacctaataattttcgt 224  Q
    |||||||||||||||||||||  |||| || | |||||||||||||||||| |||||||||||||||||||| | |||  | |||| ||||  |||||      
T  10301817 gttagttttttaatgtctaaattttttgatttgattttaaccatttgattgaatgtccattgtatttaacagtgaaccatcagcacataatttttttcac 10301718  T
Q  225 ttatcatcatcttctcttttcttcttcctcatatctatacatcaacattttccaaaatttcttttctttccaatatacaaatc 307  Q
    || |||||||||||||| ||||||||||||||||||||  ||||||||||  | | |||| |||||||||||| |||||||||    
T  10301717 tt-tcatcatcttctctcttcttcttcctcatatctat--atcaacattt--ctagattttttttctttccaaaatacaaatc 10301640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 118 - 260
Target Start/End: Complemental strand, 53809503 - 53809363
Alignment:
Q  118 tcatttccgttagttttttaatgtctaaaacttttaatata-ttttaaccatttgattgcatgtccattgtatttaacagcggaccgcccgcacctaata 216  Q
    |||| ||||||||||||||||||||||||  |||| ||||| ||||||||||||||||||||||| |||||||||||||| | | || | |||||||||     
T  53809503 tcatctccgttagttttttaatgtctaaattttttgatataattttaaccatttgattgcatgtctattgtatttaacagtgaatcgtcagcacctaatt 53809404  T
Q  217 attttcgtttatcatcatcttctcttttcttcttcctcatatct 260  Q
     |||||  ||    ||||||||||| ||||||||||||||||||    
T  53809403 tttttcactt---ttcatcttctctcttcttcttcctcatatct 53809363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 118 - 256
Target Start/End: Original strand, 48253039 - 48253178
Alignment:
Q  118 tcatttccgttagttttttaatgtctaaaacttttaatat-attttaaccatttgattgcatgtccattgtatttaacagcggaccgcccgcacctaata 216  Q
    |||| ||||||||||||||||||||||||  |||| || | |||||||||||||||||||||||||||||||| ||| || | || | |  ||||||||     
T  48253039 tcatctccgttagttttttaatgtctaaattttttgatgtgattttaaccatttgattgcatgtccattgtatctaatagtgaactgtcaacacctaatt 48253138  T
Q  217 attttcgtttatcatcatcttctcttttcttcttcctcat 256  Q
     ||||| ||| || ||||||||||| ||||||||||||||    
T  48253139 tttttcatttttcttcatcttctctcttcttcttcctcat 48253178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 125 - 256
Target Start/End: Complemental strand, 47766954 - 47766822
Alignment:
Q  125 cgttagttttttaatgtctaaaacttttaatat-attttaaccatttgattgcatgtccattgtatttaacagcggaccgcccgcacctaataattttcg 223  Q
    ||||||||||||||||||||||  |||| || | |||||||||||||||||||||||||||||||| ||| || | |||| | |||||||||  |||||     
T  47766954 cgttagttttttaatgtctaaatttttttatgtgattttaaccatttgattgcatgtccattgtatctaatagtgaaccgtcagcacctaatttttttca 47766855  T
Q  224 tttatcatcatcttctcttttcttcttcctcat 256  Q
     || | |||||||||||| |||||||| |||||    
T  47766854 cttttgatcatcttctctcttcttctttctcat 47766822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 19 - 113
Target Start/End: Complemental strand, 37416544 - 37416450
Alignment:
Q  19 cttttggttccctacctaatttcttgtttacattttagtcccataactcgaaaaatcaacattttggtccctcttgttttactccgtttgtcaaa 113  Q
    |||||||| |||||  |||||| |||||| |||||| || |||||||||  ||||||||||||||||||||||||||||| ||||||| ||||||    
T  37416544 cttttggtcccctaagtaatttgttgttttcattttggttccataactcataaaatcaacattttggtccctcttgttttgctccgttagtcaaa 37416450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 94 - 185
Target Start/End: Original strand, 14744148 - 14744240
Alignment:
Q  94 gttttactccgtttgtcaaattgatcatttccgttagttttttaatgtctaaaacttttaatat-attttaaccatttgattgcatgtccatt 185  Q
    ||||| ||||||| |||||||||||||| ||||||| ||||||||||||||||  |||| |||| |||||||||  |||||||||||||||||    
T  14744148 gttttgctccgttagtcaaattgatcatctccgttaattttttaatgtctaaattttttgatatgattttaaccgattgattgcatgtccatt 14744240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 123 - 191
Target Start/End: Complemental strand, 7271596 - 7271527
Alignment:
Q  123 tccgttagttttttaatgtctaaaacttttaatata-ttttaaccatttgattgcatgtccattgtattt 191  Q
    ||||||||||||||||||||||||  |||| || || |||||||||||||||||||||||||||||||||    
T  7271596 tccgttagttttttaatgtctaaactttttgatttaattttaaccatttgattgcatgtccattgtattt 7271527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 104 - 196
Target Start/End: Original strand, 20486100 - 20486193
Alignment:
Q  104 gtttgtcaaattgatcatttccgttagttttttaatgtctaaaacttttaatat-attttaaccatttgattgcatgtccattgtatttaacag 196  Q
    ||||||| || || ||||||  |||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||| | ||||| ||||||    
T  20486100 gtttgtctaagtggtcatttttgttagttttttaatgtctaaaacttttaatatgattttaatcatttgattgcaggtcgactgtatataacag 20486193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 113
Target Start/End: Original strand, 37415004 - 37415099
Alignment:
Q  18 acttttggttccctacctaatttcttgtttacattttagtcccataactcgaaaaatcaacattttggtccctcttgttttactccgtttgtcaaa 113  Q
    ||||||||| || ||  |||||| || ||| |||||| ||| ||||||||| ||||||||||||||||| ||||||||||| ||||||| ||||||    
T  37415004 acttttggtcccttaagtaatttgttattttcattttggtctcataactcgtaaaatcaacattttggttcctcttgttttgctccgttagtcaaa 37415099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 123 - 189
Target Start/End: Original strand, 17345421 - 17345488
Alignment:
Q  123 tccgttagttttttaatgtctaaaacttttaatat-attttaaccatttgattgcatgtccattgtat 189  Q
    ||||||||||||||||||||||| | ||||||||| |||| ||||||| ||||||||||| |||||||    
T  17345421 tccgttagttttttaatgtctaatatttttaatatgatttgaaccattcgattgcatgtctattgtat 17345488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 44 - 113
Target Start/End: Complemental strand, 14745281 - 14745212
Alignment:
Q  44 gtttacattttagtcccataactcgaaaaatcaacattttggtccctcttgttttactccgtttgtcaaa 113  Q
    |||||||| || ||||||||||||| ||| ||||| ||||||||||||||||||| ||| ||| ||||||    
T  14745281 gtttacatcttggtcccataactcgtaaagtcaacgttttggtccctcttgttttgctcagttagtcaaa 14745212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 94 - 185
Target Start/End: Complemental strand, 49380985 - 49380893
Alignment:
Q  94 gttttactccgtttgtcaaattgatcatttccgttagttttttaatgtctaaaacttttaatat-attttaaccatttgattgcatgtccatt 185  Q
    ||||| ||||||  ||||||||||||   ||||||||||||||||||| ||||| |||| |||| || ||| || ||||||||||||||||||    
T  49380985 gttttgctccgtcagtcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgatattagccgtttgattgcatgtccatt 49380893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 196
Target Start/End: Complemental strand, 54750447 - 54750374
Alignment:
Q  123 tccgttagttttttaatgtctaaaacttttaatatattttaaccatttgattgcatgtccattgtatttaacag 196  Q
    ||||||| ||||||||||||||||  ||| | |  |||||||||||||||||| ||||||| ||||||| ||||    
T  54750447 tccgttaattttttaatgtctaaatttttgatttgattttaaccatttgattgtatgtccaatgtattttacag 54750374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 192
Target Start/End: Complemental strand, 8372621 - 8372551
Alignment:
Q  123 tccgttagttttttaatgtctaaaacttttaatat-attttaaccatttgattgcatgtccattgtattta 192  Q
    ||||||||||||||||||| ||| | |||| |||| |||| ||||||| ||||||| ||||||| ||||||    
T  8372621 tccgttagttttttaatgtttaatatttttgatatgatttcaaccattcgattgcaggtccattatattta 8372551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 91
Target Start/End: Original strand, 7270348 - 7270405
Alignment:
Q  34 ctaatttcttgtttacattttagtcccataactcgaaaaatcaacattttggtccctc 91  Q
    ||||||||  |||| |||||| ||||||||| ||  ||||||||||||||||||||||    
T  7270348 ctaatttccagttttcatttttgtcccataagtcttaaaatcaacattttggtccctc 7270405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0219 (Bit Score: 63; Significance: 7e-27; HSPs: 2)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 17 - 119
Target Start/End: Complemental strand, 8298 - 8196
Alignment:
Q  17 aacttttggttccctacctaatttcttgtttacattttagtcccataactcgaaaaatcaacattttggtccctcttgttttactccgtttgtcaaattg 116  Q
    |||||||||| |||||  |||||  ||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||| |||    
T  8298 aacttttggtcccctaagtaattctttgtttacattttggtcccataactcgtaaaatcaacattttggtccctctcgttttactccgttagtcaatttg 8199  T
Q  117 atc 119  Q
    |||    
T  8198 atc 8196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0219; HSP #2
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 43 - 248
Target Start/End: Original strand, 6929 - 7133
Alignment:
Q  43 tgtttacattttagtcccataactcgaaaaatcaacattttggtccctcttgttttactccgtttgtcaaattgatcatttccgttagttttttaatgtc 142  Q
    |||||||||||| ||||||||| | | |||| |||||||||||| ||| | ||||| ||||||  ||||||||||||   ||||||||||||| ||| ||    
T  6929 tgtttacattttggtcccataaattgtaaaaccaacattttggttcctttggttttgctccgtcggtcaaattgatc-cctccgttagtttttcaatatc 7027  T
Q  143 taaaacttttaatat-attttaaccatttgattgcatgtccattgtatttaacagcggaccgcccgcacctaataattttcgtttatcatcatcttctct 241  Q
    ||||  |||| |||| ||||||||| |||||||||||||||||| ||||||| || | |||| |  ||||||||  |||||| || |||||||||||| |    
T  7028 taaattttttgatataattttaaccgtttgattgcatgtccattatatttaatagtgaaccgtcaacacctaat-tttttcgcttttcatcatcttctat 7126  T
Q  242 tttcttc 248  Q
     ||||||    
T  7127 cttcttc 7133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 4e-19; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 123 - 191
Target Start/End: Complemental strand, 18242312 - 18242243
Alignment:
Q  123 tccgttagttttttaatgtctaaaacttttaatata-ttttaaccatttgattgcatgtccattgtattt 191  Q
    ||||||||||||||||||||| ||| ||||||| || |||||||||||||||||||||||||||||||||    
T  18242312 tccgttagttttttaatgtcttaaatttttaatttaattttaaccatttgattgcatgtccattgtattt 18242243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 193
Target Start/End: Complemental strand, 138313 - 138137
Alignment:
Q  18 acttttggttccctacctaatttcttgtttacattttagtcccataactcgaaaaatcaacattttggtccctcttgttttactccgtttgtcaaattga 117  Q
    ||||||||| ||||| |||||||  ||||| |||||| |||||||||||   ||||||||| ||| |||||||      |  | ||||| ||||||||||    
T  138313 acttttggtcccctaactaatttgatgttttcattttggtcccataacttctaaaatcaacgtttcggtcccttacaaatgtcaccgttggtcaaattga 138214  T
Q  118 tcatttccgttagttttttaatgtctaaaacttttaatat-attttaaccatttgattgcatgtccattgtatttaa 193  Q
    ||   ||||||| ||||||||||||||||  |||| || | |||||||||||  |||||||||||||||||| ||||    
T  138213 tcccctccgttatttttttaatgtctaaactttttgatgtaattttaaccatccgattgcatgtccattgtagttaa 138137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 193
Target Start/End: Complemental strand, 146334 - 146158
Alignment:
Q  18 acttttggttccctacctaatttcttgtttacattttagtcccataactcgaaaaatcaacattttggtccctcttgttttactccgtttgtcaaattga 117  Q
    ||||||||| ||||| |||||||  ||||| |||||| |||||||||||   ||||||||| ||| |||||||      |  | ||||| ||||||||||    
T  146334 acttttggtcccctaactaatttgatgttttcattttggtcccataacttctaaaatcaacgtttcggtcccttacaaatgtcaccgttggtcaaattga 146235  T
Q  118 tcatttccgttagttttttaatgtctaaaacttttaatat-attttaaccatttgattgcatgtccattgtatttaa 193  Q
    ||   ||||||| ||||||||||||||||  |||| || | |||||||||||  |||||||||||||||||| ||||    
T  146234 tcccctccgttatttttttaatgtctaaactttttgatgtaattttaaccatccgattgcatgtccattgtagttaa 146158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 136636 - 136708
Alignment:
Q  18 acttttggttccctacctaatttcttgtttacattttagtcccataactcgaaaaatcaacattttggtccct 90  Q
    |||||| || ||||| ||||||| ||||||  |||||||||||||||||   ||||||||| |||||||||||    
T  136636 acttttcgtcccctaactaatttgttgtttttattttagtcccataacttttaaaatcaacgttttggtccct 136708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 30231487 - 30231559
Alignment:
Q  18 acttttggttccctacctaatttcttgtttacattttagtcccataactcgaaaaatcaacattttggtccct 90  Q
    ||||||||| || || ||||||| |||||| |||||| |||||||||||   ||||||||| |||||||||||    
T  30231487 acttttggtcccttaactaatttgttgttttcattttggtcccataacttctaaaatcaacgttttggtccct 30231559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 188
Target Start/End: Complemental strand, 30232905 - 30232842
Alignment:
Q  126 gttagttttttaatgtctaaaacttttaatata-ttttaaccatttgattgcatgtccattgta 188  Q
    |||| ||||||||||||||||  |||| ||||| ||||||||||  ||||||||||||||||||    
T  30232905 gttatttttttaatgtctaaacttttttatataattttaaccatccgattgcatgtccattgta 30232842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 98
Target Start/End: Complemental strand, 11968582 - 11968504
Alignment:
Q  20 ttttggttccctacctaatttcttgtttacattttagtcccataactcgaaaaatcaacattttggtccctcttgtttt 98  Q
    ||||||| ||||| ||||||| |||||| |||||| ||| ||||||  | ||||| ||| ||||||||||| |||||||    
T  11968582 ttttggtcccctaactaatttgttgttttcattttggtctcataacctgtaaaattaacgttttggtcccttttgtttt 11968504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 44 - 185
Target Start/End: Original strand, 38575 - 38717
Alignment:
Q  44 gtttacattttagtcccataactcgaaaaatcaacattttggtccctcttgttttactccgtttgtcaaattgatcatttccgttagttttttaatgtct 143  Q
    |||| |||||| ||||||||| | | ||||   |||||||||||||  | ||||| ||||||  ||||||||||||   ||||||||||||||||||  |    
T  38575 gtttccattttggtcccataaattgtaaaactcacattttggtccccttggttttcctccgtcagtcaaattgatcccctccgttagttttttaatgatt 38674  T
Q  144 aaaacttttaatat-attttaaccatttgattgcatgtccatt 185  Q
    |||| |||| |||| || ||| || ||||||||||||||||||    
T  38675 aaaattttttatatgatattagccgtttgattgcatgtccatt 38717  T

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Target: scaffold0148 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 145
Target Start/End: Complemental strand, 15869 - 15832
Alignment:
Q  108 gtcaaattgatcatttccgttagttttttaatgtctaa 145  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  15869 gtcaaattgatcatttccgttagttttttaatgcctaa 15832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0046 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0046
Description:

Target: scaffold0046; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 189
Target Start/End: Complemental strand, 24825 - 24753
Alignment:
Q  118 tcatttccgttagttttttaatgtctaaaacttttaatat-attttaaccatttgattgcatgtccattgtat 189  Q
    |||| ||||||||||||||||||||||| | |||| || | ||||||||||||  |||||||||| |||||||    
T  24825 tcatctccgttagttttttaatgtctaatattttttatgtgattttaaccattcaattgcatgtctattgtat 24753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 189
Target Start/End: Original strand, 11817 - 11884
Alignment:
Q  123 tccgttagttttttaatgtctaaaacttttaatat-attttaaccatttgattgcatgtccattgtat 189  Q
    ||||||||||||||||||||||| | |||| || | |||||||||||| ||||||||||  |||||||    
T  11817 tccgttagttttttaatgtctaatatttttgatgtgattttaaccattcgattgcatgtttattgtat 11884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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