View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4823-Insertion-2 (Length: 693)
Name: NF4823-Insertion-2
Description: NF4823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4823-Insertion-2 |
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Alignment Details
Target: chr4 (Bit Score: 326; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 357 - 690
Target Start/End: Original strand, 54456716 - 54457049
Alignment:
| Q |
357 |
cagtggacggtggttttgctggcttccgagcaccattggccaccaacgaggcggcattacgacgagagatggagaaggaacaaatcaggcgggatatgtt |
456 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
54456716 |
cagtggacggtggttttgctggcttccgagcaccattggccaccaacgaggcggcattacgacgagagatggagaaggaacaaatccggcgggatatgtt |
54456815 |
T |
|
| Q |
457 |
gcggcggatagagttggaggatgaagtgaggagggagcttgcaatggagggggcgtttggaactatgcagaagcctctcaattctgtgtggtcaaattct |
556 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54456816 |
gcggcggatagagttggaggatgaagtgaggagggagcttgcaatggagggggcgtttggaactatgcagaagcctctcaattctgtgtggtcaaattct |
54456915 |
T |
|
| Q |
557 |
acaccgatgatgatgatgaaccctgttgctgttgatgcttcacaaccacctgaaatcaaacattttccacagaccagtggcaaggacaaagttattctat |
656 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
54456916 |
acaccgatgatgatgatgaaccctgttgctgttgatgcttcacaaccacctgaaatcaaacattttccacagaccagtgacaaggacaaagttattctat |
54457015 |
T |
|
| Q |
657 |
tggtcagtttcgtaactttttctattctcttctc |
690 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
54457016 |
tggtcagtttcgtaactttttctattctcttctc |
54457049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 17 - 276
Target Start/End: Original strand, 54456386 - 54456645
Alignment:
| Q |
17 |
gtaagtttcatcccccatcaaacaacattcttctctatgttatgtttttagcttttttcaattcaacaacgttattagcactcattaattaataccagtt |
116 |
Q |
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| T |
54456386 |
gtaagtttcatcccccatcaaacaacattcttctctatgttatgtttttagcttttttcaattcaacaacgttattagcactcattaattaataccagtt |
54456485 |
T |
|
| Q |
117 |
ttgtttctctgaatatttatttatagtttcaagtgtttgttcaatggagttcaaatttcgtgctatcgacaacatcaatccatcaaccatgcagccttct |
216 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |
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| T |
54456486 |
ttgtttctctgaatatttatttatagtttcaagtttttgttcaatggagttcaaattccgtgctatcgataacatcaatccatcaaccatgcagccttct |
54456585 |
T |
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| Q |
217 |
cttcccaccgtcacatatatccctgatcgatctcttccaagtaattcaatctgaaaatcc |
276 |
Q |
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| T |
54456586 |
catcccaccgtcacatatctccctgaccgatctcttccaagtaattcaatctgaaaatcc |
54456645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 358 - 563
Target Start/End: Original strand, 54056396 - 54056601
Alignment:
| Q |
358 |
agtggacggtggttttgctggcttccgagcaccattggccaccaacgaggcggcattacgacgagagatggagaaggaacaaatcaggcgggatatgttg |
457 |
Q |
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|||||||||||||||| |||||| ||| | ||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |
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| T |
54056396 |
agtggacggtggtttttctggctcccgggtaccgttggccaccaatgaggcggcattacgacgagagatcgagaaggaacaaatccggcgggatatgttg |
54056495 |
T |
|
| Q |
458 |
cggcggatagagttggaggatgaagtgaggagggagcttgcaatggagggggcgtttggaactatgcagaagcctctcaattctgtgtggtcaaattcta |
557 |
Q |
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||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| | ||||||||||||| |
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| T |
54056496 |
aggcggatggagttggaggaggaagtgaggagggagcttgcaatggagggggcgtttggaaccatgcagaggcctctcaattctctatggtcaaattcta |
54056595 |
T |
|
| Q |
558 |
caccga |
563 |
Q |
| |
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|||||| |
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| T |
54056596 |
caccga |
54056601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 134 - 276
Target Start/End: Original strand, 54056188 - 54056330
Alignment:
| Q |
134 |
tatttatagtttcaagtgtttgttcaatggagttcaaatttcgtgctatcgacaacatcaatccatcaaccatgcagccttctcttcccaccgtcacata |
233 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54056188 |
tatttacagtttcaagtgtttgttcaatggagttcaaatttcgtgctatcgacaacatcaatccatcaaccatgcagccttctcttcccaccgtcacata |
54056287 |
T |
|
| Q |
234 |
tatccctgatcgatctcttccaagtaattcaatctgaaaatcc |
276 |
Q |
| |
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| ||||||||||||||||||||||||||||||| |||||||| |
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| T |
54056288 |
tctccctgatcgatctcttccaagtaattcaataggaaaatcc |
54056330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 156 - 205
Target Start/End: Complemental strand, 52322251 - 52322202
Alignment:
| Q |
156 |
ttcaatggagttcaaatttcgtgctatcgacaacatcaatccatcaacca |
205 |
Q |
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| T |
52322251 |
ttcaatggagttcaaatatcgtgctatcgacaacatcaatccatcaacca |
52322202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 628 - 689
Target Start/End: Original strand, 54056600 - 54056661
Alignment:
| Q |
628 |
gaccagtggcaaggacaaagttattctattggtcagtttcgtaactttttctattctcttct |
689 |
Q |
| |
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|||| ||| ||||||||||||||||||||||||||||||| | || ||||||| ||| |||| |
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| T |
54056600 |
gacctgtgacaaggacaaagttattctattggtcagtttcattacgttttctactcttttct |
54056661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 455 - 527
Target Start/End: Complemental strand, 15039967 - 15039895
Alignment:
| Q |
455 |
ttgcggcggatagagttggaggatgaagtgaggagggagcttgcaatggagggggcgtttggaactatgcaga |
527 |
Q |
| |
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||||||| || ||| |||||||| || ||| |||||||||||||||||||| || |||||||||| ||||||| |
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| T |
15039967 |
ttgcggcagaaagaattggaggaggaggtgtggagggagcttgcaatggagaggacgtttggaaccatgcaga |
15039895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 637 - 689
Target Start/End: Complemental strand, 15039809 - 15039756
Alignment:
| Q |
637 |
caaggacaaagttattctattggtca-gtttcgtaactttttctattctcttct |
689 |
Q |
| |
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|||||||||| ||||||||||||| | ||||| ||||||||||||||||||||| |
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| T |
15039809 |
caaggacaaaattattctattggtaaagtttcataactttttctattctcttct |
15039756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 179
Target Start/End: Complemental strand, 15043479 - 15043438
Alignment:
| Q |
138 |
tatagtttcaagtgtttgttcaatggagttcaaatttcgtgc |
179 |
Q |
| |
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||||||||||||| ||| |||||||||||||||||||||||| |
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| T |
15043479 |
tatagtttcaagtatttcttcaatggagttcaaatttcgtgc |
15043438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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