View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4823-Insertion-3 (Length: 437)
Name: NF4823-Insertion-3
Description: NF4823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4823-Insertion-3 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 6 - 437
Target Start/End: Complemental strand, 46582241 - 46581809
Alignment:
| Q |
6 |
cattgacgacgatgaagatgatgac-atta-attgtgtttccttttacagaaactagaacaagttcttagtagttggttgtttggattggtaggttagat |
103 |
Q |
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| T |
46582241 |
cattgacgacgatgaagatgaagatgatgacattgtgtttccttttacagaaactagaacaagttcttagtagttggttgtttggattggtaggttagat |
46582142 |
T |
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| Q |
104 |
tgaatgtaaggaagtagttggagaataagcgatgcggagttaaacagaattactactggcaccactttaattacttgtaatgaagattgtaggagagtgt |
203 |
Q |
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| T |
46582141 |
tgaatgtaaggaagtagttggataataagcaatgcggagttaaacagaattactactggcaccactttaattacttgtaatgaagattgtaggagagtgt |
46582042 |
T |
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| Q |
204 |
agaagaatgcatgttattattatttggatgcttggtgagatgttgttatgagacattctcattctgaaattctctttgtaaaggacgacttatattatat |
303 |
Q |
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| T |
46582041 |
aaaagaatgcatgttattattatttggatgcttgatgagatgttgttatgagacattctcattctgaaattctcgttgtaaaggatgacttatattatat |
46581942 |
T |
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| Q |
304 |
agcagatataaagaaatatctgctttgcttatttctttagaaagagaaagggtttaagaattttgtattctttgatannnnnnnnnnaatttctcacata |
403 |
Q |
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| T |
46581941 |
agcagatataaagaaatatctgctttgcttatttctttagaaagagaaagggtttaagaattttgtattctttgat-ttttttttttaatttctcacata |
46581843 |
T |
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| Q |
404 |
tttacttcaccagaatagaatcactgtcatacta |
437 |
Q |
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| T |
46581842 |
tttacttcactagaatagaatcactgtcatacta |
46581809 |
T |
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