View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4823-Insertion-5 (Length: 385)
Name: NF4823-Insertion-5
Description: NF4823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4823-Insertion-5 |
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Alignment Details
Target: chr5 (Bit Score: 343; Significance: 0; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 8 - 362
Target Start/End: Complemental strand, 38967568 - 38967214
Alignment:
| Q |
8 |
gaggagagtgttgtaaatatgtgattggcaccaatttagtattctcagtacttatttagttgtatctgtaactattaggacatatctgattctggttttt |
107 |
Q |
| |
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| T |
38967568 |
gaggagagtgttgtaaatatgtgattggcaccaatttagtattctcagtacttatttagttgtatctgtaactattaggacatatctgattctggttttt |
38967469 |
T |
|
| Q |
108 |
cttgattatgatttagtaggcttagtcaatataatcacattagtgcttgtacttcaatcctcaattaacaagattccgttttctttaattttccatttgc |
207 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38967468 |
cttgattatgatttagtaggcttagtcaatataatcacattagtgcttgtacttcaatcctcaattaacaagattccgttttctttaattttccatttgc |
38967369 |
T |
|
| Q |
208 |
atagtgtaattgatgatggtaccttgaaaacgtgaaagatgtctgattttgaacacggaaactgctcacattgtcatggtctacaagatcaaaatacata |
307 |
Q |
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| T |
38967368 |
atagtgtaattgatgatgataccttgaaaacgtgaaagatgtctgcttctgaacacggaaactgctcacattgtcatggtctacaagatcaaaatacata |
38967269 |
T |
|
| Q |
308 |
tcctttcctatctgttctgcaaggtcttcatcccgtgccacctaagaagtattat |
362 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38967268 |
tcctttcctatctgttctgcaaggtcttcatcccgtgccacctaagaagtattat |
38967214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 13 - 359
Target Start/End: Original strand, 39899483 - 39899837
Alignment:
| Q |
13 |
gagtgttgtaaatatgtgattggcaccaattt-------agtattctcagtacttatttagttgtatctgtaactattaggacatatctgattctggttt |
105 |
Q |
| |
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||||||||||||||||| ||||| |||||||| |||||||||||| |||||||||||| |||||| | ||||| |||| ||||| |||| |||| |
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| T |
39899483 |
gagtgttgtaaatatgtaattggtaccaatttaggatttagtattctcagtgcttatttagttgaatctgtgattattatgacagatctggttcttgttt |
39899582 |
T |
|
| Q |
106 |
ttcttgattatgatttagtaggcttagtcaatataatcacattagtgcttgtacttcaatcctcaattaacaagattccgttttctttaattttccattt |
205 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| | |
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| T |
39899583 |
ttcttgattatgatttattaggcttagtcaatataatcacattagtgcttgtacttcaattatcaattaacaagattccgttttctctaattttcggtag |
39899682 |
T |
|
| Q |
206 |
gcatagtgtaattgatgatggtaccttgaaaacgtgaaa-gatgtctgattttgaacacggaaactgctcacattgtcatggtctacaagatcaaaatac |
304 |
Q |
| |
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||||||||||||||||||| |||||| ||| ||| ||| ||| |||| |||||||| |||| | | ||| |||||||||||||||||||||||||| |
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| T |
39899683 |
tcatagtgtaattgatgatgatacctttaaatcgttaaatgatttctgcctttgaacatagaaaatccccactttgtcatggtctacaagatcaaaatat |
39899782 |
T |
|
| Q |
305 |
atatcctttcctatctgttctgcaaggtcttcatcccgtgccacctaagaagtat |
359 |
Q |
| |
|
||||||||||| ||||||| |||||||||||| || ||| ||||||||||||||| |
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|
| T |
39899783 |
atatcctttccaatctgttttgcaaggtcttcgtctcgtaccacctaagaagtat |
39899837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 80 - 362
Target Start/End: Original strand, 39912480 - 39912764
Alignment:
| Q |
80 |
tattaggacatatctgattctggtttttcttgattatgatttagtaggcttagtcaatataatcacattagtgcttgtacttcaatcctcaattaacaag |
179 |
Q |
| |
|
|||||||| | |||||||||| |||||||||||||| || ||| | |||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
39912480 |
tattaggaaagatctgattcttgtttttcttgattacgagttattcagcttagtcaatataatcacattagtgcttgtacttcaatcatcaattaacaag |
39912579 |
T |
|
| Q |
180 |
attccgttttctttaattttccatttg-catagtgtaattgatgatggtaccttgaaaacgtgaaa-gatgtctgattttgaacacggaaactgctcaca |
277 |
Q |
| |
|
|||||||||||| ||||||||| ||| |||||||||||||||||| |||||||||||||| ||| |||||||| |||||||||| |||||| ||||| |
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| T |
39912580 |
attccgttttctctaattttcccgttgtaatagtgtaattgatgatgataccttgaaaacgttaaatgatgtctgcttttgaacacagaaactcctcact |
39912679 |
T |
|
| Q |
278 |
ttgtcatggtctacaagatcaaaatacatatcctttcctatctgttctgcaaggtcttcatcccgtgccacctaagaagtattat |
362 |
Q |
| |
|
|| ||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||| |
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| T |
39912680 |
ttcccatggtctacaagattaaaatatatatcctttccaatctgttctgcaaggtcttcatctcgtatcacctaagaagtattat |
39912764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 144 - 362
Target Start/End: Original strand, 39858659 - 39858881
Alignment:
| Q |
144 |
acattagtgcttgtacttcaatcctcaattaacaagattccgttttctt-taattttccatttgcatagtgtaattgatgat--ggtaccttgaaaacgt |
240 |
Q |
| |
|
|||||||| |||||| |||||||||||||||||||||| | ||||| | |||||||||| | | ||||||| ||||||| | |||||||||||||| |
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| T |
39858659 |
acattagtacttgtatttcaatcctcaattaacaagatacggtttttgtctaattttccaatgtaagagtgtaactgatgatatgataccttgaaaacgt |
39858758 |
T |
|
| Q |
241 |
gaaa-gatgtctgattttgaacacggaaactgctcacattgtcatggtctacaagatcaaaatacatatcctttcctatctgttctgcaaggtcttcatc |
339 |
Q |
| |
|
||| || ||||| |||| |||||||||||| ||||| |||||| ||||||| ||||||||||| || || ||||| || |||||||||||||||||||| |
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| T |
39858759 |
taaatgacgtctgctttttaacacggaaactcctcactttgtcaaggtctacgagatcaaaatatatgtcatttccaatttgttctgcaaggtcttcatc |
39858858 |
T |
|
| Q |
340 |
ccgtgccacctaagaagtattat |
362 |
Q |
| |
|
||| |||||| ||||||||||| |
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| T |
39858859 |
tcgtaccaccttagaagtattat |
39858881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 220 - 353
Target Start/End: Original strand, 37467676 - 37467810
Alignment:
| Q |
220 |
atgatggtaccttgaaaacgtgaaa-gatgtctgattttgaacacggaaactgctcacattgtcatggtctacaagatcaaaatacatatcctttcctat |
318 |
Q |
| |
|
|||||| |||||||||||||| ||| | |||||| ||||| ||||||||||| | ||| |||||||| ||||||||||||||||| ||||||||||| || |
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|
| T |
37467676 |
atgatgataccttgaaaacgttaaatggtgtctgcttttgtacacggaaactccgcactttgtcatgttctacaagatcaaaatatatatcctttccaat |
37467775 |
T |
|
| Q |
319 |
ctgttctgcaaggtcttcatcccgtgccacctaag |
353 |
Q |
| |
|
||||||| |||| |||||||||||||||||||||| |
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|
| T |
37467776 |
ctgttctccaagatcttcatcccgtgccacctaag |
37467810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 119 - 360
Target Start/End: Original strand, 39866256 - 39866499
Alignment:
| Q |
119 |
tttagtaggcttagtcaatataatcacattagtgcttgtacttcaatcctcaattaacaagattccgttttctt-taattttccatttgcatagtgtaat |
217 |
Q |
| |
|
|||| |||||||| || |||||||||||||||||||||||| ||||||||||||| | ||||||| | |||| | | ||||| || | | ||||| |
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|
| T |
39866256 |
tttattaggcttattctatataatcacattagtgcttgtacatcaatcctcaattgataagattcagatttcctcttattttacaacgtaagactgtaac |
39866355 |
T |
|
| Q |
218 |
tgatgatggtaccttgaaaacgtgaaa-gatgtctgattttgaacacggaaactgctcacattgtcatggtctacaagatcaaaatacatatcctttcct |
316 |
Q |
| |
|
|||||||| ||||||||||| || ||| || |||| ||||||||| ||||| | ||||| ||||||| |||||| ||||||||||| |||| |||||| |
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|
| T |
39866356 |
tgatgatgataccttgaaaatgttaaatgacatctgcttttgaacatggaaaatcctcactttgtcatagtctacgagatcaaaatatatatactttcca |
39866455 |
T |
|
| Q |
317 |
atctgttctgcaaggtcttcatcccgtgccacctaagaagtatt |
360 |
Q |
| |
|
| ||||| ||||||||||||||| ||| | |||| ||||||||| |
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|
| T |
39866456 |
acctgttttgcaaggtcttcatctcgtacaacctgagaagtatt |
39866499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 258 - 353
Target Start/End: Complemental strand, 39734779 - 39734684
Alignment:
| Q |
258 |
gaacacggaaactgctcacattgtcatggtctacaagatcaaaatacatatcctttcctatctgttctgcaaggtcttcatcccgtgccacctaag |
353 |
Q |
| |
|
||||||| ||||||||||| |||||| |||| |||||||||||||| ||||||||||| ||||||| ||||||||||||||| ||| ||||||||| |
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|
| T |
39734779 |
gaacacgaaaactgctcactttgtcagggtcaacaagatcaaaatatatatcctttccaatctgttgtgcaaggtcttcatctcgtaccacctaag |
39734684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 136 - 362
Target Start/End: Original strand, 39849260 - 39849489
Alignment:
| Q |
136 |
atataatcacattagtgcttgtacttcaatcctcaattaacaagattccgttttctttaattttccatttgcatagtgtaattgatgat--ggtaccttg |
233 |
Q |
| |
|
||||||||||||||| | |||||||||||| ||||||||| |||||| || || | || |||||| | | || |||| |||||| | ||||||| |
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|
| T |
39849260 |
atataatcacattagggtttgtacttcaattctcaattaaaaagattaagtctttctcaaatttccaatgtaagagagtaaccgatgatacgataccttg |
39849359 |
T |
|
| Q |
234 |
aaaacgtgaaa-gatgtctgattttgaacacggaaactgctcacattgtcatggtctacaagatcaaaatacatatcctttcctatctgttctgcaaggt |
332 |
Q |
| |
|
||||||| ||| || | ||| ||||||||||||||||| ||||| || ||| ||||||||||||||||||| | ||| ||||| || |||||||||| || |
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|
| T |
39849360 |
aaaacgttaaacgacgcctgcttttgaacacggaaactcctcactttatcaaggtctacaagatcaaaatataaatcatttccaatttgttctgcaaagt |
39849459 |
T |
|
| Q |
333 |
cttcatcccgtgccacctaagaagtattat |
362 |
Q |
| |
|
| ||||| ||| ||||||| |||||||||| |
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|
| T |
39849460 |
cctcatctcgtaccacctaggaagtattat |
39849489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 285 - 362
Target Start/End: Original strand, 39869132 - 39869209
Alignment:
| Q |
285 |
ggtctacaagatcaaaatacatatcctttcctatctgttctgcaaggtcttcatcccgtgccacctaagaagtattat |
362 |
Q |
| |
|
||||||| ||||||||| | ||||||||||| ||||||||||| ||||||||||| ||| | |||||||||||||||| |
|
|
| T |
39869132 |
ggtctacgagatcaaaacatatatcctttccaatctgttctgccaggtcttcatctcgtactacctaagaagtattat |
39869209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 180
Target Start/End: Complemental strand, 39727734 - 39727690
Alignment:
| Q |
136 |
atataatcacattagtgcttgtacttcaatcctcaattaacaaga |
180 |
Q |
| |
|
|||||||||||||||||||||||| | ||||||||||| |||||| |
|
|
| T |
39727734 |
atataatcacattagtgcttgtacataaatcctcaattgacaaga |
39727690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 216 - 352
Target Start/End: Complemental strand, 36058012 - 36057875
Alignment:
| Q |
216 |
attgatgatggtaccttgaaaacgtgaaa-gatgtctgattttgaacacggaaactgctcacattgtcatggtctacaagatcaaaatacatatcctttc |
314 |
Q |
| |
|
||||||| || |||||||||||| | ||| | |||||| ||||| ||||||||||| ||||| ||||| ||||||||||||||||| || |||||||||| |
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|
| T |
36058012 |
attgatggtgataccttgaaaacattaaaaggtgtctgcttttgtacacggaaacttctcactttgtcgtggtctacaagatcaaagtagatatcctttc |
36057913 |
T |
|
| Q |
315 |
ctatctgttctgcaaggtcttcatcccgtgccacctaa |
352 |
Q |
| |
|
| ||||| || ||| |||||||||||||||||||||| |
|
|
| T |
36057912 |
ccatctgcccttcaatgtcttcatcccgtgccacctaa |
36057875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 102 - 152
Target Start/End: Complemental strand, 29624527 - 29624477
Alignment:
| Q |
102 |
gtttttcttgattatgatttagtaggcttagtcaatataatcacattagtg |
152 |
Q |
| |
|
|||||||||||||| |||||| ||||||||| | ||||||||||||||||| |
|
|
| T |
29624527 |
gtttttcttgattaagatttattaggcttagcctatataatcacattagtg |
29624477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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