View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4823-Insertion-6 (Length: 270)

Name: NF4823-Insertion-6
Description: NF4823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4823-Insertion-6
NF4823-Insertion-6
[»] chr5 (3 HSPs)
chr5 (8-128)||(13958235-13958355)
chr5 (177-270)||(13958096-13958188)
chr5 (8-77)||(6273903-6273972)
[»] chr1 (3 HSPs)
chr1 (177-270)||(961798-961882)
chr1 (8-77)||(961650-961719)
chr1 (81-131)||(961703-961753)
[»] chr2 (1 HSPs)
chr2 (93-127)||(29782019-29782053)


Alignment Details
Target: chr5 (Bit Score: 89; Significance: 6e-43; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 8 - 128
Target Start/End: Complemental strand, 13958355 - 13958235
Alignment:
Q  8 ggtaggccggctcgagcaagtcattggatcgcccatgcaattagctcggcgagaactggtcaaaaccggtaaaaaccggactaaatcggtgactcggccg 107  Q
    |||||||||| |||||||||||||||||| | |||||||||||||||||||||||| ||| |||||| ||||||||||||| ||| ||||||||||||||    
T  13958355 ggtaggccggttcgagcaagtcattggataggccatgcaattagctcggcgagaaccggttaaaaccagtaaaaaccggacaaaaccggtgactcggccg 13958256  T
Q  108 agtttttggttggaccggttc 128  Q
    |||||||||||||||||||||    
T  13958255 agtttttggttggaccggttc 13958235  T

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Target: chr5; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 177 - 270
Target Start/End: Complemental strand, 13958188 - 13958096
Alignment:
Q  177 tttgaattaattagtcattaataagaacaattatgtaattatatatggtttaatactgattaatgtccattatacacgaatttaactactaatt 270  Q
    |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||||||    
T  13958188 tttgaatttattagtcattaataagaacaattatgtaattatgtatggtttaataccgattaatgtccattatacacgaa-ttaactactaatt 13958096  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 6273972 - 6273903
Alignment:
Q  8 ggtaggccggctcgagcaagtcattggatcgcccatgcaattagctcggcgagaactggtcaaaaccggt 77  Q
    |||||||||| ||||||  | | |||||||| ||||| |||||||||||||||||| |||||||||||||    
T  6273972 ggtaggccggttcgagctggcctttggatcggccatgtaattagctcggcgagaaccggtcaaaaccggt 6273903  T

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Target: chr1 (Bit Score: 57; Significance: 7e-24; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 177 - 270
Target Start/End: Original strand, 961798 - 961882
Alignment:
Q  177 tttgaattaattagtcattaataagaacaattatgtaattatatatggtttaatactgattaatgtccattatacacgaatttaactactaatt 270  Q
    |||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  961798 tttgaattaattagtcattaataagaacaattatgta--------tggtttaatactgattaatgtccattatacacgaa-ttaactactaatt 961882  T

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Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 961650 - 961719
Alignment:
Q  8 ggtaggccggctcgagcaagtcattggatcgcccatgcaattagctcggcgagaactggtcaaaaccggt 77  Q
    |||||||||| |||||||||||||||||||   ||||||||||||||||||||||| |||||||||||||    
T  961650 ggtaggccggttcgagcaagtcattggatcagtcatgcaattagctcggcgagaaccggtcaaaaccggt 961719  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 81 - 131
Target Start/End: Original strand, 961703 - 961753
Alignment:
Q  81 aaccggactaaatcggtgactcggccgagtttttggttggaccggttcgta 131  Q
    |||||| | ||| ||||||||||||||||||||||||| ||||||||||||    
T  961703 aaccggtcaaaaccggtgactcggccgagtttttggttagaccggttcgta 961753  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 127
Target Start/End: Complemental strand, 29782053 - 29782019
Alignment:
Q  93 tcggtgactcggccgagtttttggttggaccggtt 127  Q
    |||||||||||||||||| ||||||||||||||||    
T  29782053 tcggtgactcggccgagtatttggttggaccggtt 29782019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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