View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4823_high_1 (Length: 545)
Name: NF4823_high_1
Description: NF4823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4823_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 499; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 19 - 533
Target Start/End: Complemental strand, 42846215 - 42845701
Alignment:
| Q |
19 |
ccagaatgtaacgaattgggagtggtccctcgcagagcctagcaaagaaaacatggatgcggatgattttaaggagaagatgaaaatgaagggaaagtga |
118 |
Q |
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| T |
42846215 |
ccagaatgtaacgaattgggagtggtccctcgcagagcctagcaaagaaaacatggatgcagatgattttaaggagatgatgaaaatgaagggaaagtga |
42846116 |
T |
|
| Q |
119 |
aaagtatttagagacaacgaggatgacgagaatggtcgcatgcactccacacttttcattcccgatccccttatgctgagcatgaattattttgcttagt |
218 |
Q |
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| T |
42846115 |
aaagtatttagagacaacgaggatgacgagaatggtcgcatgcactccacacttttcattcccgatccccttatgttgagcatgaattattttgcttagt |
42846016 |
T |
|
| Q |
219 |
caggtgaaacatctctcagccacacaagatcagtagccctgtgtgcatcaacgagtagattcaggtaggaaactctgaataagttctgcaagcatgttat |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42846015 |
caggtgaaacatctctcagccacacaagatcagtagccctgtgtgcatcaacgagtagattcaggtaggaaactctgaataagttctgcaagcatgttat |
42845916 |
T |
|
| Q |
319 |
ccatgcctctttctttgagtgctcagcaatttcattgacgtttgcacggctcatagcctcccagtacaaaaaatccattgtcatttctgtcttttctctc |
418 |
Q |
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| T |
42845915 |
ccatgcctctttctttgagtgctcagcaatttcattgacgtttgcacggctcatagcctcccagtacaaaaaatccattgtcatttctgtcttttctctc |
42845816 |
T |
|
| Q |
419 |
ttccctgccttagctgcttgtgcatgtatattcttgaactatcccaattgaagtcctcctttttctctttccctgcttcattgcataattatggtcacca |
518 |
Q |
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| T |
42845815 |
ttccctgccttagctgcttgtgcatgtatattcttgaactatcccaattgaagtcatcctttttctctttccctgcttcattgcataattatggtcacca |
42845716 |
T |
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| Q |
519 |
aaatctgattcccta |
533 |
Q |
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| T |
42845715 |
aaatctgattcccta |
42845701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 31 - 146
Target Start/End: Complemental strand, 42825449 - 42825334
Alignment:
| Q |
31 |
gaattgggagtggtccctcgcagagcctagcaaagaaaacatggatgcggatgattttaaggagaagatgaaaatgaagggaaagtgaaaagtatttaga |
130 |
Q |
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|||||||||||||| ||||| |||||||||||||||| ||||| |||||||||| ||||||| | |||||| ||||||||| | |||||||||||| |
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| T |
42825449 |
gaattgggagtggttcctcgaggagcctagcaaagaaagtgaggatgaggatgattttgaggagaaaaggaaaataaagggaaagcggaaagtatttaga |
42825350 |
T |
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| Q |
131 |
gacaacgaggatgacg |
146 |
Q |
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| T |
42825349 |
gacaacgaggatgacg |
42825334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 301 - 491
Target Start/End: Complemental strand, 41980056 - 41979870
Alignment:
| Q |
301 |
gttctgcaagcatgttatccatgcctctttctttgagtgc-tcagcaatttcattgacgtttgcacggctcatagcctcccagtacaaaaaatccattgt |
399 |
Q |
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|||| ||||||||||| | |||||| || ||||||| ||| ||||||||||| ||||||||||| || |||| ||| ||||||| ||| | ||||| | |
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| T |
41980056 |
gttcagcaagcatgttgttcatgcccctctctttgattgcatcagcaatttccttgacgtttgcccgtctcacagcttcccagtccaatgagtccatgtt |
41979957 |
T |
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| Q |
400 |
catttctgtcttttctctcttccctgccttagctgcttgtgcatgtatattcttgaactatcccaattgaagtcctcctttttctctttccc |
491 |
Q |
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| T |
41979956 |
gctttctgtcttttctctcttcccagccgtagct---tgtgcctgtat--tcttaaactatcccaattgaagttatccttcttctctttccc |
41979870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 209 - 283
Target Start/End: Complemental strand, 41980247 - 41980173
Alignment:
| Q |
209 |
tttgcttagtcaggtgaaacatctctcagccacacaagatcagtagccctgtgtgcatcaacgagtagattcagg |
283 |
Q |
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| T |
41980247 |
tttgcttggtcaggtggaacatctctaagccactcgagatcaatagccccgtgtttttcaacgagtagattcagg |
41980173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 161 - 206
Target Start/End: Complemental strand, 41980495 - 41980450
Alignment:
| Q |
161 |
cactccacacttttcattcccgatccccttatgctgagcatgaatt |
206 |
Q |
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| T |
41980495 |
cactccacacttttcaatcccaatccccttatgctgagcaagaatt |
41980450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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