View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4823_high_2 (Length: 486)
Name: NF4823_high_2
Description: NF4823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4823_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 19 - 478
Target Start/End: Complemental strand, 45357480 - 45357016
Alignment:
| Q |
19 |
ggtgcgatatgaatttttatatttatttcttgcttacaatatcatgcatacaatat-ttaattcaattaaacttgttcccaagtgatggctcggttggtt |
117 |
Q |
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| T |
45357480 |
ggtgcgatatgaatttttatatttatttcttgcttacaatatcatgcatacaatatattaattcaattaaacttgttcccaagtgatggctcggttggtt |
45357381 |
T |
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| Q |
118 |
gagtttggacactcaaaggagnnnnnnnnnnn----gatcaattaattgtagtttttgttaaactaaatcttaatgttaggtgaggctttgataatttgt |
213 |
Q |
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| T |
45357380 |
gagtttggacactcaaaggagtttttttttttttttgatcaattaattgtagtttttgttaaactaaatcttaatgttaggtgaggctttgataatttgt |
45357281 |
T |
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| Q |
214 |
caaaataaaagacgtaagactctgattgttgatgttgttcttgttttctttgacaaaaatgttgtcccttgttgacactccataaccggcaactacaaaa |
313 |
Q |
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| T |
45357280 |
caaaataaaagacgtaacactctgattgttgatgtttttcttgttttctttgacaaaaatgttgtcccttgttgacactccataaccggcaactacaaaa |
45357181 |
T |
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| Q |
314 |
aatgattttacacattattgggcgattaaacatgtcaacnnnnnnncgataattattggccggtaatgttaggtttcccacactgttgaagaaaaaactg |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
45357180 |
aatgattttacacattattgggcgattaaacatgtcaacaaaaaaacgataattattggccggtaatgttaggtttcccacacttttgaagaaaaaactg |
45357081 |
T |
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| Q |
414 |
ccatcttttctggcaggttgttttatttctcattctatttgtaactttttaaaaagagaataatc |
478 |
Q |
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| T |
45357080 |
ccatcttttctggcaggttgttttatttctcattctatttgtaactttttaaaaagagaataatc |
45357016 |
T |
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