View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4823_high_4 (Length: 247)
Name: NF4823_high_4
Description: NF4823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4823_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 16 - 227
Target Start/End: Complemental strand, 14160393 - 14160181
Alignment:
| Q |
16 |
attattctttgtgatcaaagtatgagacaacttggcccatatgggcatagataggcctaggtagcaccaagttgatgatgatatcaaccaaacaatcctc |
115 |
Q |
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| T |
14160393 |
attattctttgtgatcaaagtatgagacaacttggcccatatgggcatagataggcctaggtagcaccaagttgatgatgaaatcaaccaaacaatcctc |
14160294 |
T |
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| Q |
116 |
tgctactccgaaacaaacacttgcacttgcacaaccaatagtagaaccaatttttcattcttcttagtattgaa-nnnnnnnattctttgagccacaaca |
214 |
Q |
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| T |
14160293 |
tgctactctgaaacaaacacttgcacttgcacaaccaatagtagaaccaatttttcattcttcttagtattgaattttttttattctttgagccacaaca |
14160194 |
T |
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| Q |
215 |
caaatatacatac |
227 |
Q |
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| T |
14160193 |
caaatatacatac |
14160181 |
T |
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