View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4823_low_3 (Length: 418)
Name: NF4823_low_3
Description: NF4823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4823_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 173; Significance: 7e-93; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 226 - 398
Target Start/End: Original strand, 34011897 - 34012069
Alignment:
| Q |
226 |
cccataacttagttccaaattaatgtacgtaagtggagtgagagtagaggcatggcaacgtcattatactccaaaagctagctaccatccatcagtttcc |
325 |
Q |
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| T |
34011897 |
cccataacttagttccaaattaatgtacgtaagtggagtgagagtagaggcatggcaacgtcattatactccaaaagctagctaccatccatcagtttcc |
34011996 |
T |
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| Q |
326 |
tttcatgttctctcttcccacctcactcttaccctttgcatgcatctcatttcccttaatataactaactaac |
398 |
Q |
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| T |
34011997 |
tttcatgttctctcttcccacctcactcttaccctttgcatgcatctcatttcccttaatataactaactaac |
34012069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 34011671 - 34011796
Alignment:
| Q |
1 |
cgtggtaatt-catagtaaaggcacctgcacagcagctatcaaccaaaatacaaacagatgaaattgaaccaacaaatagtgtgagtttgagctccgacg |
99 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34011671 |
cgtggtaatttcatagtaaaggcacctgcacagcagctatcaaccaaaatacaaacagatgaaattgaaccaacaaatagtgtgagtttgagctccgacg |
34011770 |
T |
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| Q |
100 |
acttcttctttgatctaaaactcatt |
125 |
Q |
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| T |
34011771 |
acttcttctttgatctaaaactcatt |
34011796 |
T |
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