View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4823_low_5 (Length: 238)
Name: NF4823_low_5
Description: NF4823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4823_low_5 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 9287058 - 9286838
Alignment:
| Q |
18 |
aatgcatggtccgaagttgactattcaattttatgattttcatctatggcttactggtttatgtagtctgatttatgttactgatttttagcaatgaatc |
117 |
Q |
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| T |
9287058 |
aatgcatggtccgaagttgactattcaattttatgattttcatctatggcttactggtttatgtagtctgatttatgttactgatttttagcaatgaatc |
9286959 |
T |
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| Q |
118 |
atccgtattttacttgttacaccagtcattgcctcactttacttctatagtatagttgtgtttgatttggatttgaatttctcacttgcattatatgcaa |
217 |
Q |
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| T |
9286958 |
atcagtattttacttgttacaccagtcatcgcctcactttacttctatagtatagttgtgtttgatttggatttgaatttctcacttgcattatatgcca |
9286859 |
T |
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| Q |
218 |
cttgcaggatgatatttgttc |
238 |
Q |
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| T |
9286858 |
cttgcaggatgatatttgttc |
9286838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 28 - 238
Target Start/End: Complemental strand, 9298392 - 9298182
Alignment:
| Q |
28 |
ccgaagttgactattcaattttatgattttcatctatggcttactggtttatgtagtctgatttatgttactgatttttagcaatgaatcatccgtattt |
127 |
Q |
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| T |
9298392 |
ccgaagtttaccattgatttttatgattttcatctatggcttactggtttatgtagtctgatttatgtttctgatttttagcaatgaatcatcagtattt |
9298293 |
T |
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| Q |
128 |
tacttgttacaccagtcattgcctcactttacttctatagtatagttgtgtttgatttggatttgaatttctcacttgcattatatgcaacttgcaggat |
227 |
Q |
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| T |
9298292 |
tacttgctacaccagtcatcgcctcactttacttctatagtatagttgtgtttgatttggatttgaatttctcacttgcattatatgccacttgcaggat |
9298193 |
T |
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| Q |
228 |
gatatttgttc |
238 |
Q |
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| T |
9298192 |
gatatttgttc |
9298182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 110
Target Start/End: Complemental strand, 7724545 - 7724466
Alignment:
| Q |
31 |
aagttgactattcaattttatgattttcatctatggcttactggtttatgtagtctgatttatgttactgatttttagca |
110 |
Q |
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| T |
7724545 |
aagttgactatacatttttatgattttcatctatgatttactgatttgtatagtcttatttttgttgctggtttttagca |
7724466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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