View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4824-Insertion-1 (Length: 1054)
Name: NF4824-Insertion-1
Description: NF4824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4824-Insertion-1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 900; Significance: 0; HSPs: 11)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 900; E-Value: 0
Query Start/End: Original strand, 8 - 1043
Target Start/End: Complemental strand, 25540708 - 25539666
Alignment:
| Q |
8 |
aaacgtacacatacttggtttactttcaaatgcatcgagtttcctaagaacacattcatttaccgaacatgtacctttcatatacaactatgttgttaga |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
25540708 |
aaacgtacacatacttggtttactttcaaatgcatcgagtttcctaagaacacattcatttacctaacatgtacctttcatatacaactatgttgttaga |
25540609 |
T |
|
| Q |
108 |
agcaacactgtatcaagttagtagtcctttagctttgaggattcgagtgctcgcaacaaatgcaactctaggagctgttctatataatggtaaatttgat |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25540608 |
agcaacactgtatcaagttagtagtcctttagctttgaggattcgagtgctcgcaacaaatgcaactctaggagctgttctatataatggtaaatttgat |
25540509 |
T |
|
| Q |
208 |
agatggaacaagtaacgttcctcagtgaaattggttactgatgcgttagctgattactcatattttaccatttgctcctacaattttcagattttaagat |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25540508 |
agatggaacaagtaacgttcctcagtgaaattggttactgatgcgttagctgattactcatattttaccatttgctcctacaattttcagattttaagat |
25540409 |
T |
|
| Q |
308 |
ttattaagttttttatgatgttggctccttttctataatatcagtaaggattttatgcttacga-------------taatacggttgtttgttattaca |
394 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
25540408 |
ttattaagttttttatgatgttggctccttttctataatatcagtaaggattttatgcttacgagttataatgtatataatacggttgtttgttattaca |
25540309 |
T |
|
| Q |
395 |
tttgattttgatataacggatttgtagctagtgcagcttatgaactcttggtataagcactctttttgtatgaagggcctatttggattgactagttttg |
494 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25540308 |
tttgattttgatataacggatttgtagctagtgcagcttatgaactcttggtataagcactctttttgtatgaagggcctatttggattgactagttttg |
25540209 |
T |
|
| Q |
495 |
ggcgtatgtgggctcttttggtatatgcactttatagggctgtttgggtgagagtatcacaagagcttatgagctcccataagttgtttgtcataagctc |
594 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25540208 |
ggcgtatgtgggctcttttggtatatgcactttatagggctgtttgggtgagagtatcacaagagcttatgagctcccataagttgtttgtcataagctc |
25540109 |
T |
|
| Q |
595 |
tcctaacaagcttatgaatttgggcttatgcagttcctcggcttatgaccctaaccgcaaacctctttgtcatatcgctagtgctgttcctctcgtcgta |
694 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25540108 |
tcttaacaagcttatgaatttgggcttatgcagttcctcggcttatgaccctaaccgcaaacctctttgtcatatcgctagtgctgttcctctcgtcgta |
25540009 |
T |
|
| Q |
695 |
cccctctttgctcttcaactcatgtattcatcaacattccttgtattttaggtcgatttgcttgctttctttgtcatgatttttgcatgttccattcatt |
794 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25540008 |
cccctctttgctcttcaactcatgtattcatcaacattccttgtattttaggtcgatttgcttgctttctttgtcatgatttttgcatgttccattcatt |
25539909 |
T |
|
| Q |
795 |
tcttcatgtacgtggttttttcttgttcatccatgttccttgtgaccttgttttatccatggattttttgttgttaattttcttgtttatgttaaaatgt |
894 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25539908 |
tcttcatgtacgtggttttttcttgtttatccatgttccttgtgaccttgttttatccat-gattttttgttgttaattttcttgtttatgttaaaatgt |
25539810 |
T |
|
| Q |
895 |
aagacacttatcacatttgcagc-aaagtaatattttctttctcaaatgaagcaactgcttcctaaacatttagaacactgtgaagttttatatggatta |
993 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
25539809 |
aagacacttatcacatttgcagcaaaagtaatattt--cttctcaaatgaagcaactgcttcctaaaca-ttagaacactgtgaagttt--tatggatta |
25539715 |
T |
|
| Q |
994 |
gga--ttaacacacaggaaccatggttcaaggttttcttgtgtcaaccaaca |
1043 |
Q |
| |
|
||| | |||||||| |||||||||| ||||||| |||||||||||||| |
|
|
| T |
25539714 |
ggaattaaacacaca-gaaccatggtcaaaggttt--ctgtgtcaaccaaca |
25539666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 371 - 616
Target Start/End: Original strand, 25517261 - 25517494
Alignment:
| Q |
371 |
ataatacggttgtttgttattacatttgattttgatataacggatttgtagctagtgcagcttatgaactcttggtataagcactctttttgtatgaagg |
470 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25517261 |
ataatacggttgcttgttattacatttgattttgatataaaggatttgtagctagtgcagcttatgaactcttggtataagcactctttttgtatgaagg |
25517360 |
T |
|
| Q |
471 |
gcctatttggattgactagttttgggcgtatgtgggctcttttggtatatgcactttatagggctgtttgggtgagagtatcacaagagcttatgagctc |
570 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |
|
|
| T |
25517361 |
gcctatttggattgactagttttgggcgta------------tggtatatgcactttatagaggtgtttgggtgagagtatcacaagagcttatgagctc |
25517448 |
T |
|
| Q |
571 |
ccataagttgtttgtcataagctctcctaacaagcttatgaatttg |
616 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25517449 |
ccataagttgtttgtcataagctctcctaacaagcttatgaatttg |
25517494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 130 - 334
Target Start/End: Original strand, 25517048 - 25517251
Alignment:
| Q |
130 |
agtcctttagctttgaggattcgagtgctcgcaacaaatgcaactctaggagctgttctatataatggtaaatttgatagatggaacaagtaacgttcct |
229 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||| |||||||||||| | ||||||||||| |
|
|
| T |
25517048 |
agtcctttggctttgaggattcgagtgctcgcaacaaatgcaactctaggagctgtttttt-taatggtaaatatgatagatggaataggtaacgttcct |
25517146 |
T |
|
| Q |
230 |
cagtgaaattggttactgatgcgttagctgattactcatattttaccatttgctcctacaattttcagattttaagatttattaagttttttatgatgtt |
329 |
Q |
| |
|
|||||||||||| | ||||| ||||||||||||||||||||||||||||| |||||||||||||||| |||||| | ||||||||||||||| ||||||| |
|
|
| T |
25517147 |
cagtgaaattggctgctgatacgttagctgattactcatattttaccattcgctcctacaattttcaaattttatggtttattaagttttttctgatgtt |
25517246 |
T |
|
| Q |
330 |
ggctc |
334 |
Q |
| |
|
||||| |
|
|
| T |
25517247 |
ggctc |
25517251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 663 - 829
Target Start/End: Original strand, 25517537 - 25517703
Alignment:
| Q |
663 |
gtcatatcgctagtgctgttcctctcgtcgtacccctctttgctcttcaactcatgtattcatcaacattccttgtattttaggtcgatttgcttgcttt |
762 |
Q |
| |
|
|||||||| ||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||| |||||| |
|
|
| T |
25517537 |
gtcatatccctagtgctgttcctctcttcatacccctctttgctcctcaactcatgtattcatcaacgttccttgtattttgggtcgatttgcctgcttt |
25517636 |
T |
|
| Q |
763 |
ctttgtcatgatttttgcatgttccattcatttcttcatgtacgtggttttttcttgttcatccatg |
829 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25517637 |
ttatgtcatgatttttgcatgttccattcatttcttcatgtacgtggttttttcttgttcatccatg |
25517703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 117; E-Value: 5e-59
Query Start/End: Original strand, 126 - 369
Target Start/End: Complemental strand, 25525049 - 25524812
Alignment:
| Q |
126 |
tagtagtcctttagctttgaggattcgagtgctcgcaacaaatgcaactctaggagctgttctatataatggtaaatttgatagatggaacaagtaacgt |
225 |
Q |
| |
|
|||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||| ||| | | | | || |||||||||||||| ||||| | |
|
|
| T |
25525049 |
tagtagtcctttggctttgacgatttgagtgctcgcaacaaatgcaactctaggagccgttttttttta------atatgatagatggaacaggtaacat |
25524956 |
T |
|
| Q |
226 |
tcctcagtgaaattggttactgatgcgttagctgattactcatattttaccatttgctcctacaattttcagattttaagatttattaagttttttatga |
325 |
Q |
| |
|
|||||||||||||||||| ||||||||| ||||||||| ||| ||||||||| ||||||| ||||||||||||||| | ||||||||||||||| ||| |
|
|
| T |
25524955 |
tcctcagtgaaattggttgatgatgcgttgactgattactaataatttaccattcgctcctataattttcagattttatggtttattaagttttttctga |
25524856 |
T |
|
| Q |
326 |
tgttggctccttttctataatatcagtaaggattttatgcttac |
369 |
Q |
| |
|
|||||||||||||||||||||||||| || ||||| ||| |||| |
|
|
| T |
25524855 |
tgttggctccttttctataatatcagcaacgatttcatgtttac |
25524812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 80; E-Value: 6e-37
Query Start/End: Original strand, 371 - 531
Target Start/End: Complemental strand, 25524762 - 25524598
Alignment:
| Q |
371 |
ataatacggttgtttgttattacatttgattttgatataacggatttgtagctagtgcagcttatgaactcttggtataagca----ctctttttgtatg |
466 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||||| || ||| ||||||||||| |||||||||| ||| ||||||||| |||| |||||||| |
|
|
| T |
25524762 |
ataatacggttgcttcttattacatttgattttgatacaaaggaattgtagctagtagagcttatgaattctccgtataagcaagcactctgtttgtatg |
25524663 |
T |
|
| Q |
467 |
aagggcctatttggattgactagttttgggcgtatgtgggctcttttggtatatgcactttatag |
531 |
Q |
| |
|
|| ||||| |||||||| |||| ||||||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
25524662 |
aaaggcctctttggatttactaattttgggagtatctgggctcttttggtatatgcactttatag |
25524598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 19 - 111
Target Start/End: Complemental strand, 25534161 - 25534070
Alignment:
| Q |
19 |
tacttggtttactttcaaatgcatcgagtttcctaagaacacattcatttaccgaacatgtacctttcatatacaactatgttgttagaagca |
111 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||| ||| ||| |||||||||| |||||||| |||||||||||||||| |
|
|
| T |
25534161 |
tacttggtttactttcaaatgcatcgagattcctaagaacacattcagctactgaatatgtaccttt-atatacaaatatgttgttagaagca |
25534070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 19 - 126
Target Start/End: Original strand, 25516252 - 25516359
Alignment:
| Q |
19 |
tacttggtttactttcaaatgcatcgagtttcctaagaacacattcatttaccgaacatgtacctttcatatacaactatgttgttagaagcaacactgt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||| || ||| ||||||| |||| ||| |||||||||||| ||||||| | ||| ||| |
|
|
| T |
25516252 |
tacttggtttactttcaaatgcatcgaggttcctaagaacacatccagctactgaacatgcacctgtcagatacaactatgtagttagaatctacattgt |
25516351 |
T |
|
| Q |
119 |
atcaagtt |
126 |
Q |
| |
|
||| |||| |
|
|
| T |
25516352 |
atctagtt |
25516359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 25 - 111
Target Start/End: Complemental strand, 25526153 - 25526068
Alignment:
| Q |
25 |
gtttactttcaaatgcatcgagtttcctaagaacacattcatttaccgaacatgtacctttcatatacaactatgttgttagaagca |
111 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||| ||| ||| ||||||| ||||||||||| ||||| |||||||||| |
|
|
| T |
25526153 |
gtttactttcaaatgcatcgagattcctaagaacacattcagctactgaatatgtacc-ttcatatacaaatatgtcgttagaagca |
25526068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 859 - 929
Target Start/End: Original strand, 25517705 - 25517776
Alignment:
| Q |
859 |
tttttgttgttaatttt-cttgtttatgttaaaatgtaagacacttatcacatttgcagc-aaagtaatattt |
929 |
Q |
| |
|
||||||||||||| ||| ||||||||||||||| |||||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
25517705 |
tttttgttgttaaatttgcttgtttatgttaaa-tgtaagacacttctcacatttgcagcaaaagtaatattt |
25517776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 390 - 442
Target Start/End: Complemental strand, 25537244 - 25537194
Alignment:
| Q |
390 |
ttacatttgattttgatataacggatttgtagctagtgcagcttatgaactct |
442 |
Q |
| |
|
||||||||||||||||||| | |||| |||||||||||| |||||||||||| |
|
|
| T |
25537244 |
ttacatttgattttgatatgaaggat--gtagctagtgcatcttatgaactct |
25537194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 564 - 623
Target Start/End: Original strand, 27122674 - 27122733
Alignment:
| Q |
564 |
tgagctcccataagttgtttgtcataagctctcctaacaagcttatgaatttgggcttat |
623 |
Q |
| |
|
|||||||||||||| ||||| |||||||||| |||||||||||||| || |||||||||| |
|
|
| T |
27122674 |
tgagctcccataagctgtttttcataagctcccctaacaagcttataaacttgggcttat |
27122733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 140 - 184
Target Start/End: Complemental strand, 44461068 - 44461024
Alignment:
| Q |
140 |
ctttgaggattcgagtgctcgcaacaaatgcaactctaggagctg |
184 |
Q |
| |
|
||||||||||| ||||||| ||||||||||||||||||| ||||| |
|
|
| T |
44461068 |
ctttgaggattggagtgcttgcaacaaatgcaactctagcagctg |
44461024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 555 - 613
Target Start/End: Original strand, 24023997 - 24024055
Alignment:
| Q |
555 |
aagagcttatgagctcccataagttgtttgtcataagctctcctaacaagcttatgaat |
613 |
Q |
| |
|
||||||||||||||||||||||| ||||| | ||||||||||| |||||||||||| |
|
|
| T |
24023997 |
aagagcttatgagctcccataagctgttttcaacgagctctcctaataagcttatgaat |
24024055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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