View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4824-Insertion-10 (Length: 334)

Name: NF4824-Insertion-10
Description: NF4824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4824-Insertion-10
NF4824-Insertion-10
[»] chr2 (3 HSPs)
chr2 (7-196)||(32257879-32258068)
chr2 (263-334)||(32257741-32257812)
chr2 (262-334)||(32257661-32257733)
[»] scaffold0390 (6 HSPs)
scaffold0390 (7-196)||(136-325)
scaffold0390 (67-196)||(5251-5380)
scaffold0390 (262-334)||(391-463)
scaffold0390 (262-334)||(5446-5518)
scaffold0390 (262-334)||(471-543)
scaffold0390 (262-334)||(5526-5598)
[»] chr4 (2 HSPs)
chr4 (11-196)||(1067059-1067245)
chr4 (263-334)||(1066119-1066190)
[»] scaffold0786 (3 HSPs)
scaffold0786 (67-196)||(1663-1792)
scaffold0786 (263-334)||(1859-1930)
scaffold0786 (262-334)||(1938-2010)
[»] chr1 (1 HSPs)
chr1 (11-196)||(35240807-35240993)
[»] chr6 (1 HSPs)
chr6 (14-196)||(11927674-11927859)


Alignment Details
Target: chr2 (Bit Score: 178; Significance: 6e-96; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 7 - 196
Target Start/End: Complemental strand, 32258068 - 32257879
Alignment:
Q  7 aaatagaagaggaaatatatgtatggtttttacagtattgaactttgtatcaaatgtaagcttttgagttgttctttaatcatgcttttactataaataa 106  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  32258068 aaatagaagaggaaatatatgtatggttgttacagtattgaactttgtatcaattgtaagcttttgagttgttctttaatcatgcttttactataaataa 32257969  T
Q  107 tgcctcaaatgtaagatttctactcttattaattcagttaatgcatttcaatcctttgtagtatcatttcaatttttgctgttaaaataa 196  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32257968 tgcctcaaatgtaagatttctactcttattaatccagttaatgcatttcaatcctttgtagtatcatttcaatttttgctgttaaaataa 32257879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 263 - 334
Target Start/End: Complemental strand, 32257812 - 32257741
Alignment:
Q  263 gtcaaggaaatgtatttctgttggttttattattctccatatcaatcactgctatcactcatatgtctacaa 334  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||    
T  32257812 gtcaaggaaatgtatttctgttggttttattattctccatatcaatcactgctattactcttatgtctacaa 32257741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 262 - 334
Target Start/End: Complemental strand, 32257733 - 32257661
Alignment:
Q  262 ggtcaaggaaatgtatttctgttggttttattattctccatatcaatcactgctatcactcatatgtctacaa 334  Q
    |||||||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||| |||||||||||    
T  32257733 ggtcaaggaaatgtatttgtgttggttttatttttctccatatcaatcactactatcactcttatgtctacaa 32257661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0390 (Bit Score: 174; Significance: 1e-93; HSPs: 6)
Name: scaffold0390
Description:

Target: scaffold0390; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 7 - 196
Target Start/End: Original strand, 136 - 325
Alignment:
Q  7 aaatagaagaggaaatatatgtatggtttttacagtattgaactttgtatcaaatgtaagcttttgagttgttctttaatcatgcttttactataaataa 106  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  136 aaatagaagaggaaatatatgtatggttgttacagtattgaactttgtatcaattgtaagcttttgagttgttctttaatcatgcttttactataaataa 235  T
Q  107 tgcctcaaatgtaagatttctactcttattaattcagttaatgcatttcaatcctttgtagtatcatttcaatttttgctgttaaaataa 196  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  236 tgcctcaaatgtaagatttctactcttattaatccagttaatgcattccaatcctttgtagtatcatttcaatttttgctgttaaaataa 325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0390; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 67 - 196
Target Start/End: Original strand, 5251 - 5380
Alignment:
Q  67 cttttgagttgttctttaatcatgcttttactataaataatgcctcaaatgtaagatttctactcttattaattcagttaatgcatttcaatcctttgta 166  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  5251 cttttgagttgttctttaatcatgtttttactataaataatgcctcaaatgtaagatttctactcttattaatccagttaatgcatttcaatcctttgta 5350  T
Q  167 gtatcatttcaatttttgctgttaaaataa 196  Q
    ||||||||||||||||||||||||||||||    
T  5351 gtatcatttcaatttttgctgttaaaataa 5380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0390; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 262 - 334
Target Start/End: Original strand, 391 - 463
Alignment:
Q  262 ggtcaaggaaatgtatttctgttggttttattattctccatatcaatcactgctatcactcatatgtctacaa 334  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||    
T  391 ggtcaaggaaatgtatttctgttggttttattattctccatatcaatcactgctatgactcttatgtctacaa 463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0390; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 262 - 334
Target Start/End: Original strand, 5446 - 5518
Alignment:
Q  262 ggtcaaggaaatgtatttctgttggttttattattctccatatcaatcactgctatcactcatatgtctacaa 334  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||    
T  5446 ggtcaaggaaatgtatttctgttggttttattattctccatatcaatcactgctatgactcttatgtctacaa 5518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0390; HSP #5
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 262 - 334
Target Start/End: Original strand, 471 - 543
Alignment:
Q  262 ggtcaaggaaatgtatttctgttggttttattattctccatatcaatcactgctatcactcatatgtctacaa 334  Q
    |||||||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||| |||||||||||    
T  471 ggtcaaggaaatgtatttgtgttggttttatttttctccatatcaatcactactatcactcttatgtctacaa 543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0390; HSP #6
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 262 - 334
Target Start/End: Original strand, 5526 - 5598
Alignment:
Q  262 ggtcaaggaaatgtatttctgttggttttattattctccatatcaatcactgctatcactcatatgtctacaa 334  Q
    |||||||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||| |||||||||||    
T  5526 ggtcaaggaaatgtatttgtgttggttttatttttctccatatcaatcactactatcactcttatgtctacaa 5598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 171; Significance: 8e-92; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 11 - 196
Target Start/End: Complemental strand, 1067245 - 1067059
Alignment:
Q  11 agaagaggaaatatatgtatggtttttacagtattgaactttgtatcaaatgtaagcttttgagttgttctttaatcatgcttttactataaataatgcc 110  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1067245 agaagaggaaatatatgtatggttgttacagtattgaactttgtatcaaatgtaagcttttgagttgttctttaatcatgcttttactataaataatgcc 1067146  T
Q  111 tcaaatgtaagatttctactcttattaattcagttaatgcatttcaatcctttgtagta-tcatttcaatttttgctgttaaaataa 196  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  1067145 tcaaatgtaagatttctactcttattaatccagttaatgcatttcaatcctttgtagtattcatttcaatttttgctgttaaaataa 1067059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 263 - 334
Target Start/End: Complemental strand, 1066190 - 1066119
Alignment:
Q  263 gtcaaggaaatgtatttctgttggttttattattctccatatcaatcactgctatcactcatatgtctacaa 334  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  1066190 gtcaaggaaatgtatttgtgttggttttattattctccatatcaatcactgctatcactcttatgtctacaa 1066119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0786 (Bit Score: 126; Significance: 6e-65; HSPs: 3)
Name: scaffold0786
Description:

Target: scaffold0786; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 67 - 196
Target Start/End: Original strand, 1663 - 1792
Alignment:
Q  67 cttttgagttgttctttaatcatgcttttactataaataatgcctcaaatgtaagatttctactcttattaattcagttaatgcatttcaatcctttgta 166  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  1663 cttttgagttgttctttaatcatgcttttactataaataatgcctcaaatgtaagatttctactcttattaatccagttaatgcatttcaatcctttgta 1762  T
Q  167 gtatcatttcaatttttgctgttaaaataa 196  Q
    ||||||||||||||||||||||||||||||    
T  1763 gtatcatttcaatttttgctgttaaaataa 1792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0786; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 263 - 334
Target Start/End: Original strand, 1859 - 1930
Alignment:
Q  263 gtcaaggaaatgtatttctgttggttttattattctccatatcaatcactgctatcactcatatgtctacaa 334  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  1859 gtcaaggaaatgtatttctgttggttttattattctccatatcaatcactgctatcactcttatgtctacaa 1930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0786; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 262 - 334
Target Start/End: Original strand, 1938 - 2010
Alignment:
Q  262 ggtcaaggaaatgtatttctgttggttttattattctccatatcaatcactgctatcactcatatgtctacaa 334  Q
    |||||||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||| |||||||||||    
T  1938 ggtcaaggaaatgtatttgtgttggttttatttttctccatatcaatcactactatcactcttatgtctacaa 2010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 123; Significance: 4e-63; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 11 - 196
Target Start/End: Complemental strand, 35240993 - 35240807
Alignment:
Q  11 agaagaggaaatatatgtatggtttttacagtattgaactttgtatcaaatgtaagcttttgagtt-gttctttaatcatgcttttactataaataatgc 109  Q
    |||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  35240993 agaagaggtaatatatgtatggttgttacagttttgaactttgtatcaaatgtaagcttttgagtttgttctttaatcatgcttttactataaataatgc 35240894  T
Q  110 ctcaaatgtaagatttctactcttattaattcagttaatgcatttcaatcctttgtagtatcatttcaatttttgctgttaaaataa 196  Q
     ||||||||||||||||||||||||| ||| ||||||||||||||||||||  ||||  ||  || || ||||||||||||||||||    
T  35240893 atcaaatgtaagatttctactcttataaatccagttaatgcatttcaatccaatgtaagattgttacagtttttgctgttaaaataa 35240807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 14 - 196
Target Start/End: Complemental strand, 11927859 - 11927674
Alignment:
Q  14 agaggaaatatatgtatggtttttacagtattgaactttgtatcaaatgtaagcttttgagttgttctttaatcatgcttttactataaataatgcctca 113  Q
    ||||| ||||||||||||  | || || | ||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||||| |||    
T  11927859 agaggcaatatatgtatgactgttgcaattttgaactttgtatcaaatgtaagcttttgagatgctctttaattatgcttttactataaataatgcatca 11927760  T
Q  114 aatgtaagatttctactcttattaattcagttaatgcatttcaatcctttgtagta-tcatttc--aatttttgctgttaaaataa 196  Q
    |||||||||||||||||||||| | | | |||||||||||||||||| |||||||| |||||||  | |||||||| |||||||||    
T  11927759 aatgtaagatttctactcttataattccggttaatgcatttcaatccattgtagtattcatttcgaattttttgctattaaaataa 11927674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University