View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4824-Insertion-2 (Length: 982)
Name: NF4824-Insertion-2
Description: NF4824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4824-Insertion-2 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 679; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 679; E-Value: 0
Query Start/End: Original strand, 230 - 982
Target Start/End: Complemental strand, 3425650 - 3424893
Alignment:
| Q |
230 |
gatggacagtgcaaacttttgcacagaaatagagcaaggatggaggacaatgatgacataaccaggctctcataagtcataccatatttgtcttataggg |
329 |
Q |
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| T |
3425650 |
gatggacagtgcaaacttttgcacagaaatagagcaaggatggagaacaatgatgacataaccaggctctcataagtcataccatatttgtcttatagga |
3425551 |
T |
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| Q |
330 |
cacaagagtgtgtatgatagctattgtagatacgctatacaagattctagctatgacagttaattatggataactaacaagataacttgctacacaagtt |
429 |
Q |
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| T |
3425550 |
cacaagagtgtgtatgatagctattgtagatacgctatacaagattctagctatgacagttaattatggataactaacaagataacttgctacacaagtt |
3425451 |
T |
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| Q |
430 |
atctctgtaaatgacactaacttccttattttcatggtcaatacaaggcaacaatgacagaactcaaactcaaagatacggtaacaggatttttgagaat |
529 |
Q |
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| T |
3425450 |
atctctgtgaatgacactaacttccttattttcatggtcaatacaaggcaacaatgacagaactcaaactcaaagatacggtaacaggatttttgagaat |
3425351 |
T |
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| Q |
530 |
ttttccctaaaattgcaatagcagacatcaaatcacaacggtaccgggatagcaccagcgccgcaatggcgctgctttttaaccactaatataggccgct |
629 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3425350 |
ttttccctaaaattgcaatagcagatatcaaatcacaacggtaccgggatagcaccagcgccgcaatggcgctgctttttaaccactaatataggccgct |
3425251 |
T |
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| Q |
630 |
agtgatgatactctcaatggcgcttttcgggcctatggtgcggaagtggagggcagcgccgccaaactacaccgctatagcgtgctattgacaacatagc |
729 |
Q |
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| T |
3425250 |
agtgatgatactctcaatggcgcttttcgggcctatggtgcggaagtggagggcagcgctgccaaactacaccgctatagcgtgctattggcaacatagc |
3425151 |
T |
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| Q |
730 |
tgaaataaaaattcctgaaattttcaaattgattgcggattaaacaatccctttggctcttaaacgttgtggtgttgcgacaataggttttgaatatatc |
829 |
Q |
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| T |
3425150 |
tgaaataaaaattcctgaaattttcaaattgattgcggattaaacaatccctttggctcttaaacgttgtggtgttgcgacaataggttttgaatatatc |
3425051 |
T |
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| Q |
830 |
aaaacttacagaaatatatacatctttcataagccagtttgggttgtgtcttttgttaattagtttgtcaatcgaacgtgtcttctgctagtcaatttga |
929 |
Q |
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| T |
3425050 |
aaaacttacagaaatatatacatctttcataagccagtttgg-ttgtgtcttttgttaattagtttgtcaattgaatgtgtcttccgctagtcaatttga |
3424952 |
T |
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| Q |
930 |
tcactaaatt-----acataagacacatttaggaaac-aaataagtgtttaccttttga |
982 |
Q |
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| T |
3424951 |
tcactaaaattactaacataagacacatttaggaaacaaaataagtgtttaccctttga |
3424893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 101; E-Value: 2e-49
Query Start/End: Original strand, 8 - 112
Target Start/End: Complemental strand, 3425872 - 3425768
Alignment:
| Q |
8 |
tcaataataaagtagtataatggtcaataggttaaaagagtgaatcacttatattcattaaaaaatttgagagccatcaatttagtctctgaaattcttt |
107 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3425872 |
tcaataataaagtagcataatggtcaataggttaaaagagtgaatcacttatattcattaaaaaatttgagagccatcaatttagtctctgaaattcttt |
3425773 |
T |
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| Q |
108 |
gttgt |
112 |
Q |
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||||| |
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| T |
3425772 |
gttgt |
3425768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 690 - 730
Target Start/End: Original strand, 9832953 - 9832993
Alignment:
| Q |
690 |
gccaaactacaccgctatagcgtgctattgacaacatagct |
730 |
Q |
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|||| ||||||||||||||| |||||||||||||||||||| |
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| T |
9832953 |
gccacactacaccgctatagtgtgctattgacaacatagct |
9832993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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