View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4824-Insertion-3 (Length: 967)
Name: NF4824-Insertion-3
Description: NF4824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4824-Insertion-3 |
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Alignment Details
Target: chr3 (Bit Score: 737; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 737; E-Value: 0
Query Start/End: Original strand, 8 - 961
Target Start/End: Complemental strand, 45303636 - 45302682
Alignment:
| Q |
8 |
ctaagtacgtggacggatacctggaatagtctagaatttcctaaaagagtcaccgttggatgacttcatgattgaaatgaaaattgaccaattccgtacc |
107 |
Q |
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| T |
45303636 |
ctaagtacgtggacggatacctgaaatagtctagaatttcctaaaagagtcaccgttggatgacttcatgattgaaatgaaaattgaccaattccgtact |
45303537 |
T |
|
| Q |
108 |
actagctaatcctcgaaatctcgaatttgacggaatataaa-tttggctaaattattggaatgtctgtccaagtacaccaagacagtttggccaactcca |
206 |
Q |
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||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45303536 |
actagctaatcctcgaaatctcgaatttgacggaatagaaaatttggctaaattattggaatgtctgtccaagtacaccaagacagtttggccaactcca |
45303437 |
T |
|
| Q |
207 |
gatagatcttcttacgtgccctaatgcatgattgtttaatttacattgtcaaccatatgtgtgtggctggataatagttatgaattgtgatgatatatat |
306 |
Q |
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| T |
45303436 |
gatagatcttcttacgtgccctaatgcatgattgtttaatttacattgtcaaccatatgtgtgtgg----ataatagctatgaattgtgatgatat---- |
45303345 |
T |
|
| Q |
307 |
ttcactttgatttagtttgcgcaaaataatttttcgacatcaaaactcatctacattagagagagaaagaaataatgagaatggtgtgatagatattacg |
406 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||| |
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| T |
45303344 |
ttcactttgatttagtttacgcaaaataatttttcgacatcaaaactcatctgcattagagagagaaagaaataatgagagtggtgtgatagatgttacg |
45303245 |
T |
|
| Q |
407 |
ttattggttggtgatgtgataggaagagaaaaatagatagaaaataagatgttgaatgtatgt-nnnnnnngggaaacgtgttcaattatataattgccc |
505 |
Q |
| |
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| T |
45303244 |
ttattggttggtgatgtgataggatgagaaaaatagatagaaaataagatgttgaatgtatgtaaaaaaaaaagaagcgtattcaaatatataattgccc |
45303145 |
T |
|
| Q |
506 |
ttaatatatacacattgttaatgttatgattttttgtactaacaaggaattatctagactttcctcataagggattacaaattcacacatgtatattcct |
605 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45303144 |
ttaatatatacacattgttaatgttatgattttttgtactaacaaggaattatctagactttcctcataagggattacaaattcacacatgtatattcct |
45303045 |
T |
|
| Q |
606 |
gatatattgacggtttaaattttttacactgacgttagagctgaaggctggcactaaggaaaggcaacaacctaaacattgcttcaaagttcaaaccacc |
705 |
Q |
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| T |
45303044 |
gatatattgacggtttaaattttttacactgacattagagctgaaggctggcactaaggaaaggcaacaacctaaacattgcttcaaagttcaaaccacc |
45302945 |
T |
|
| Q |
706 |
atactcactcaactaaaaagattcttagttgggcctcacttagatttcacctctcatttggaataacannnnnnnngttcccgactcaattatagatcac |
805 |
Q |
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| T |
45302944 |
atactcactcaactaaaaagattcttagttgggcctcacttagatttcacctctcatttggaataaca-tttttttgttcccgactcaattatagatcac |
45302846 |
T |
|
| Q |
806 |
gggaatgctgtatttttcgtcattttttgaatccagatttggctggagtggtgcaattgtc-aagaactcaagcaatttcacaccc-ag-aaccgattac |
902 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |||||||||| |
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| T |
45302845 |
gggaatgctgtatttttcgtcatttttcgaatccagatttggctggagtggtgcaattgtcaaagaactcaagcaatttcacacccgagaaaccgattac |
45302746 |
T |
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| Q |
903 |
-gggtttaaat-cgctcaaaatat--gggttgc-gtgtgaatgaatatatagtttgcatgggaa |
961 |
Q |
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|||||||||| |||||||||||| || |||| |||||||||||||||||||||||||||||| |
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| T |
45302745 |
ggggtttaaatccgctcaaaatattgggtttgcggtgtgaatgaatatatagtttgcatgggaa |
45302682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 415 - 469
Target Start/End: Original strand, 37780612 - 37780666
Alignment:
| Q |
415 |
tggtgatgtgataggaagagaaaaatagatagaaaataagatgttgaatgtatgt |
469 |
Q |
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||||||||||||||||||||| ||||||| |||||||||||||||||||| |||| |
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| T |
37780612 |
tggtgatgtgataggaagagacaaatagagagaaaataagatgttgaatgaatgt |
37780666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 418 - 463
Target Start/End: Complemental strand, 51169659 - 51169614
Alignment:
| Q |
418 |
tgatgtgataggaagagaaaaatagatagaaaataagatgttgaat |
463 |
Q |
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|||||||||| ||||||||| ||||||||||||||| || |||||| |
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| T |
51169659 |
tgatgtgataagaagagaaagatagatagaaaataaaatattgaat |
51169614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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