View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4824-Insertion-5 (Length: 872)
Name: NF4824-Insertion-5
Description: NF4824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4824-Insertion-5 |
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Alignment Details
Target: chr6 (Bit Score: 711; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 711; E-Value: 0
Query Start/End: Original strand, 7 - 741
Target Start/End: Complemental strand, 19414732 - 19413998
Alignment:
| Q |
7 |
agagtcttctaccttttcaccattacttcaacctgaaacagtcataaagcaatactgctttaaggtcaaggctgaggagatacaaagactcaaaatgagg |
106 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19414732 |
agagtcttctaccttttcaccattacttcaacctgaaacagtcataaagcaatactgctttaaggtcaaggctgaggagatacaaagactcaaaatgagg |
19414633 |
T |
|
| Q |
107 |
ttggtggagggaaatgataaagaatcaacacatatcacaacgtttgagtcgctagctgcctatgtatggagggctagagcgagagccttaagactccaca |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19414632 |
ttggtggagggaaatgataaagaatcaacacatatcacaacgtttgagtcgctagctgcctatgtatggagggctagagcgagagccttaagactccaca |
19414533 |
T |
|
| Q |
207 |
acaatggaaaaacaatgctaactttgttagtttccatgagaagaaacgtgatggagattcccttgccgaaaggttattatgggaactccatcgtggacgg |
306 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19414532 |
acaatggaaaaacaatgctaaccttgttagtttccatgagaagaaacgtgatggagattcccttgccgaaaggttattatgggaactccatcgtggacgg |
19414433 |
T |
|
| Q |
307 |
caatattattttaaatgtagctgaactcattgaaaatccactcaacgaaattgttcaacgaatcaaaactgcgaaaaatgatgcgttcagcaaagattat |
406 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |||||||||| |
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| T |
19414432 |
caatattattttaaatgtagctgaactcattgaaaatccactcaacgaaattgttcaacgaatcaaaacggcaaaaaatgatgcgttcaccaaagattat |
19414333 |
T |
|
| Q |
407 |
ataaaaaattacataatgaatgctttggatacaaaccatgaggatgagttcatcatggaatctagtggtgcagtaacagttttgacagagtggaaacatt |
506 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
19414332 |
ataaaaaattacataatgaatgctttggatacaaaccatgaggatgagttcatcatggaatctagtggtgcagtaacagttttgacagagtggaagcatt |
19414233 |
T |
|
| Q |
507 |
tgggctttcagggaagcattgattttggaggatttgaagcagttaattttgtaatagcaccatgcaacatgtttcaacttgtcggtacatgcatcttcat |
606 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19414232 |
tgggctttcagggaagcattgattttggaggatttgaagcagttaattttgtaatagcaccatgcaacatgtttcaacttgtcggtacatgcatcttcat |
19414133 |
T |
|
| Q |
607 |
gtctccatgtaaacttgatgatcaagatccatcgatgaaaggaggagcaaggattttcataacactccctgttgatgccatgcccaagttcaaggaagaa |
706 |
Q |
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| T |
19414132 |
gtctccatgtaaacttgatgatcaagatccatcgatgaaaggaggagcaaggattttcataacactccctgttgatgccatgcccaagttcaaggaagaa |
19414033 |
T |
|
| Q |
707 |
atggaagcgcttaatgtttcttaattgaacttctg |
741 |
Q |
| |
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|||||||||||||||||||||||||||||| |||| |
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| T |
19414032 |
atggaagcgcttaatgtttcttaattgaacctctg |
19413998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 1e-28; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 470 - 714
Target Start/End: Complemental strand, 27069533 - 27069289
Alignment:
| Q |
470 |
agtggtgcagtaacagttttgacagagtggaaacatttgggctttcagggaagcattgattttggaggatttgaagcagttaattttgtaatagcaccat |
569 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||| ||||| | || || ||||||||||| | ||||| || ||||| ||| |||||| | |
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| T |
27069533 |
agtggtgcagtaacagttttgacagagtggaagcatttgggttttcatgaaaatatagattttggaggctatgaagttgtgaatttagtaccagcaccgt |
27069434 |
T |
|
| Q |
570 |
gcaacatgttt-caacttgtcggtacatgcatcttcatgtctccatgtaaacttgatgatcaagatccatcgatgaaaggaggagcaaggattttcataa |
668 |
Q |
| |
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|||| ||| || | || || | | | ||||| ||| |||||| ||||||||||||||| |||||||| ||| | ||||||| |||||||||| | |
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| T |
27069433 |
gcaagatgcttgctacc-gttgatgcgtgcattttctcgtctcctaataaacttgatgatcatgatccatcaatggatggaggagttaggattttcacat |
27069335 |
T |
|
| Q |
669 |
cactccctgttgatgccatgcccaagttcaaggaagaaatggaagc |
714 |
Q |
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|||||||||||||||||||||| ||||||||||| ||||| ||||| |
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| T |
27069334 |
cactccctgttgatgccatgcctaagttcaaggacgaaattgaagc |
27069289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 615 - 714
Target Start/End: Complemental strand, 27045376 - 27045277
Alignment:
| Q |
615 |
gtaaacttgatgatcaagatccatcgatgaaaggaggagcaaggattttcataacactccctgttgatgccatgcccaagttcaaggaagaaatggaagc |
714 |
Q |
| |
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|||||||||||||| | |||||||| ||||||||||||| | |||||| | | |||||||||||| ||||||||| | ||||||||| ||||| ||||| |
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| T |
27045376 |
gtaaacttgatgatgatgatccatcaatgaaaggaggagttaagatttttacatcactccctgttgctgccatgccaaggttcaaggaggaaattgaagc |
27045277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 616 - 714
Target Start/End: Complemental strand, 27041036 - 27040938
Alignment:
| Q |
616 |
taaacttgatgatcaagatccatcgatgaaaggaggagcaaggattttcataacactccctgttgatgccatgcccaagttcaaggaagaaatggaagc |
714 |
Q |
| |
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||||||||||||||| |||| ||| ||| ||||||||| ||||| || | | |||||||||||| ||| ||||| ||||||||||| ||||| ||||| |
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| T |
27041036 |
taaacttgatgatcatgatctatcaatggaaggaggagttaggatatttacatcactccctgttgctgctatgcctaagttcaaggacgaaattgaagc |
27040938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 632 - 714
Target Start/End: Complemental strand, 27098096 - 27098014
Alignment:
| Q |
632 |
gatccatcgatgaaaggaggagcaaggattttcataacactccctgttgatgccatgcccaagttcaaggaagaaatggaagc |
714 |
Q |
| |
|
|||||||| ||||||||||| | | |||||| | ||||||||||||| ||||||||||||||||||||| ||||| ||||| |
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| T |
27098096 |
gatccatcaatgaaaggaggggttaagatttttactacactccctgttgctgccatgcccaagttcaaggaggaaattgaagc |
27098014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 462 - 518
Target Start/End: Complemental strand, 27062474 - 27062418
Alignment:
| Q |
462 |
tggaatctagtggtgcagtaacagttttgacagagtggaaacatttgggctttcagg |
518 |
Q |
| |
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||||| |||||||||||||||| ||| | |||||||||||||||||||| ||||||| |
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| T |
27062474 |
tggaagctagtggtgcagtaacggttctaacagagtggaaacatttgggttttcagg |
27062418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 668 - 714
Target Start/End: Complemental strand, 27105059 - 27105013
Alignment:
| Q |
668 |
acactccctgttgatgccatgcccaagttcaaggaagaaatggaagc |
714 |
Q |
| |
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||||||||||||| ||||||||||||||||||||| ||||| ||||| |
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| T |
27105059 |
acactccctgttgctgccatgcccaagttcaaggaggaaattgaagc |
27105013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 616 - 714
Target Start/End: Complemental strand, 27062320 - 27062222
Alignment:
| Q |
616 |
taaacttgatgatcaagatccatcgatgaaaggaggagcaaggattttcataacactccctgttgatgccatgcccaagttcaaggaagaaatggaagc |
714 |
Q |
| |
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||||||||||||||| |||||||| ||| | ||||||| ||||| || | ||||||| |||| ||| ||||| ||||||||||| ||||| ||||| |
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| T |
27062320 |
taaacttgatgatcatgatccatcaatggatggaggagttaggatatttacttcactccccgttgctgctatgcctaagttcaaggacgaaattgaagc |
27062222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 527 - 580
Target Start/End: Complemental strand, 27045464 - 27045411
Alignment:
| Q |
527 |
gattttggaggatttgaagcagttaattttgtaatagcaccatgcaacatgttt |
580 |
Q |
| |
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||||||||||| | |||| |||| ||||||||| ||||||||||||||||||| |
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|
| T |
27045464 |
gattttggagggtatgaatcagtgaattttgtaccagcaccatgcaacatgttt |
27045411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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