View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4824-Insertion-6 (Length: 676)
Name: NF4824-Insertion-6
Description: NF4824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4824-Insertion-6 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 546; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 546; E-Value: 0
Query Start/End: Original strand, 8 - 676
Target Start/End: Complemental strand, 26777114 - 26776446
Alignment:
| Q |
8 |
ggtggatcatttaaagttctggtaccagcagatggagcttgaggagtttgtgtggctgattttctggcagaatcgcttgcttgatcggtaattgctccat |
107 |
Q |
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| T |
26777114 |
ggtggatcatttaaagttctggtaccagcagatggagcttgaggagtttgtgtggctgattgtcttgcataatcacttgcttgaccggtaattgctccat |
26777015 |
T |
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| Q |
108 |
gaggtgctgaaatgtctccattttcgacatatgtgacatcatgtctgctggatcgccttctttctttcttctctttcgttgaattcggacctttgaagta |
207 |
Q |
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| T |
26777014 |
gaggtgctgaaatgtctccattttcgacatatgtgacatcatgtctgctggatcgccttctttctttcttctctttcgttgaattcagacctttgaagta |
26776915 |
T |
|
| Q |
208 |
tttttgagcatgacttgctatttgtgtatgtgtttttgtcaccacataattctctgagannnnnnnccatttaccctttccatacttctccacacccata |
307 |
Q |
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| T |
26776914 |
tttttgagcatgacttgctatttgtgtatgtgtttttgtcaccacataattctctgagatttttttccatttaccctttccatacttctccacacccata |
26776815 |
T |
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| Q |
308 |
agaaataacctgctcatcaaatttcaaaatacttaaaaaacaatactaattagttaaaacaatgcttagaatatggaaacatgcatgtaaaatacacaca |
407 |
Q |
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| T |
26776814 |
agaaataacctgctcatcaaatttcaaaatacttaaaaaacaatactaattagttaaaacaatgcttagaatatggaaacatgcatgtaaaatacacaca |
26776715 |
T |
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| Q |
408 |
tattgatacggtcaaacactaatcctagctggtggacgataaagctctagaaataattaagttatttgatgtataactccttatacatggattacaatta |
507 |
Q |
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| T |
26776714 |
tattgatacggtcgaacactaatcctagctagtggacgataaagctctagaaataattaaattatttgatgtataactccttatacatggattacaatta |
26776615 |
T |
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| Q |
508 |
gcactttttcaattatgacatg----taagttgcaccaaaccttcacaccnnnnnnnnnnnnaaggagtccatcaaaactaattcaagaaactcaaaccc |
603 |
Q |
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| T |
26776614 |
gcactttttcaattatgacatgtaattaagttgcaccaaaacttcacacc----ttttttttaaggagtccatcaaaactaattcaagaaactcaaaccc |
26776519 |
T |
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| Q |
604 |
taaaccctaaactagcacccgagataatcgagtctctaagaccttgatagagcacactccaaggtctccagcc |
676 |
Q |
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| T |
26776518 |
taaaccctaaactagcaatcgagataatcgagtctctaagaccttgatagagcacactccaaggtctccagcc |
26776446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 74 - 253
Target Start/End: Original strand, 26553800 - 26553979
Alignment:
| Q |
74 |
gcagaatcgcttgcttgatcggtaattgctccatgaggtgctgaaatgtctccattttcgacatatgtgacatcatgtctgctggatcgccttctttctt |
173 |
Q |
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||||||| |||||||||| ||||||||| ||| ||||||||||||||||||||||||| |||| | |||||||||||| ||||||||||||||||||||| |
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| T |
26553800 |
gcagaattgcttgcttgaccggtaattggtccttgaggtgctgaaatgtctccatttttgacaaaggtgacatcatgtatgctggatcgccttctttctt |
26553899 |
T |
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| Q |
174 |
tcttctctttcgttgaattcggacctttgaagtatttttgagcatgacttgctatttgtgtatgtgtttttgtcaccaca |
253 |
Q |
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| T |
26553900 |
tcttctctttcattgaatcctgacgaattttgtatttctgagcatggcttgctacttgtgtaggtgttcttgtcaccaca |
26553979 |
T |
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