View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4824_high_2 (Length: 349)
Name: NF4824_high_2
Description: NF4824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4824_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 14 - 331
Target Start/End: Complemental strand, 39888150 - 39887833
Alignment:
| Q |
14 |
catcaccctgtgagaaatgcatgtcacctgtgctgagatttgctccttctacaaaaacaggaagatatacctttgaacctctgcttagattttttatgtc |
113 |
Q |
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| T |
39888150 |
catcaccctgtgagaaatgcatgtcacctgtgctgagatttgctccttctacaaaaacaggaagatatacctttgaacctctgcttagattttttatgtc |
39888051 |
T |
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| Q |
114 |
acaatttccaccgttttctcttcccggtattgttcttgctgcttcccttgcaatcttctcccattcatcagtacctttttcaatctacaagagtttcaag |
213 |
Q |
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| T |
39888050 |
acaatttccaccgttttctcttcccggtattgttcttgctgcttcccttgcaatcttctcccattcatcagtatctttttcaatctacaagagtttcaag |
39887951 |
T |
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| Q |
214 |
aaatgaaatcttgtttgatttcttaacaagccaacaaaacaatggtccaatataatatggtcagctatgtaacttgtataagctacgaagcataaactct |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
39887950 |
aaatgaaatcttgtttgatttcttaacaagccaacaaaacaatggtccaatataatatggtcagctatgtaacttgtataagctatgaagcataaactct |
39887851 |
T |
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| Q |
314 |
gacatagacacaaatacg |
331 |
Q |
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| T |
39887850 |
gacatagacacaaatacg |
39887833 |
T |
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