View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4824_high_3 (Length: 304)
Name: NF4824_high_3
Description: NF4824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4824_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 18 - 300
Target Start/End: Complemental strand, 38385042 - 38384760
Alignment:
| Q |
18 |
agttatgtggatattgggattcaagcatttggatcaaagggaagattcttagttgcaacattcatctacatggaaatcttcatgtcacttgtttcctaca |
117 |
Q |
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| T |
38385042 |
agttatgtggatattgggaatcaagcatttggatcaaagggaagattcttagttgcaacattcatctacatggaaatcttcatgtcacttgtttcctaca |
38384943 |
T |
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| Q |
118 |
ccatctcattacatgacaacttgatcatagtatttttggggacacatctgaagctgaaattggccatattatcaacatcacagctcttaactttggtggc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38384942 |
ccatctcattacatgacaacttgatcatagtatttttggggacacatctgaagctgaaattggccatattatcaacatcacagctcttaactttggtggc |
38384843 |
T |
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| Q |
218 |
agtcttgattgctctgcctagtttgtggatcagagatttgtcttctatatcttttctttcatctcttggtattcttatctctc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
38384842 |
agtcttgattgctctgcctagtttgtggatcagagatttgtcttctatatcttttctttcatctcttggtattcttatgtctc |
38384760 |
T |
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