View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4824_high_5 (Length: 244)
Name: NF4824_high_5
Description: NF4824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4824_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 7010671 - 7010901
Alignment:
| Q |
1 |
ttcggatttcctttggaaattatgaatggatgagaactatcaataataaactatgttgctttgtttccaaaagaacccagtattactttttaatttccc- |
99 |
Q |
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| T |
7010671 |
ttcggatttcctttggaaattatgaatggatgagaactatcaataataaactatgttgctttgtttccaaaagaacccagtattactttttaatttcccc |
7010770 |
T |
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| Q |
100 |
tgggttgaaattttttctaatattgaacttattagcagggttttcaaattctgttttctgatattgtgaaaaattgcggtcagattcggttgatgtaaca |
199 |
Q |
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| T |
7010771 |
tgggttgaaattttttctaatattgaacttattagcagggttttcaaattgtgttttctgatattgtgaaaaattgcggtcagattcggttgatgtaaca |
7010870 |
T |
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| Q |
200 |
gtaatcaatgcaattacgacatagtcaatga |
230 |
Q |
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| T |
7010871 |
gtaatcaatgcaattacgacatagtcaatga |
7010901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 7007606 - 7007678
Alignment:
| Q |
1 |
ttcggatttcctttggaaattatgaatggatgagaactatcaataataaa--ctatgttgctttgtttccaaa |
71 |
Q |
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||||||||||| |||||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||| |
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| T |
7007606 |
ttcggatttcccttggaaattaagaatggatgagaactatcaataataaagtatatgttgttttgtttccaaa |
7007678 |
T |
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