View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4824_low_1 (Length: 555)
Name: NF4824_low_1
Description: NF4824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4824_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 497; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 1 - 536
Target Start/End: Complemental strand, 51933669 - 51933133
Alignment:
| Q |
1 |
tcagtatataagttttatgcaactatatcacaatcttgaaggtatgaactgtacttgcatgaactgcagtggtttgaaaagaaggcctaccaagatacac |
100 |
Q |
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| T |
51933669 |
tcagtatataagttttatacaactatatcacaatcttgaaggtatgaactgtacttgcatgaactgcagtggtttgaaaagaaggcctaccaagatacac |
51933570 |
T |
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| Q |
101 |
ttctgaaattagctggtctattcaagaacaattttgatggatttgtgagctacaagatagggaaagatcaaaagttaactgaagagattgtctctgcggg |
200 |
Q |
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| T |
51933569 |
ttctgaaattagctggtctattcaagaacaattttgatggatttgtgagctacaagatagggaaagatcaaaagttaactgaagagattgtctctgctgg |
51933470 |
T |
|
| Q |
201 |
tcctatattctgattggagaacttaatctgtaagtgcttctcagcaaaacaaaagatacagggttggagatttatccttttagaagcatcacactaatca |
300 |
Q |
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| T |
51933469 |
tcctatattctgattggagcacttaagctggaagtgcttctaagcaaaacaaaagatacagggttggagatttatccttttagaagcatctcactaatca |
51933370 |
T |
|
| Q |
301 |
ctttcactctaaagtcttcactgtttttggtaggcttgagcttgactataagtctatcagtttattttattattgtttatgctttcgtccatcaatgtgt |
400 |
Q |
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| T |
51933369 |
ctttcactctaaagtcttcactgtttttggtaggcttgagcttgactataagtctatcagtttattttattattgtttatgctttcgtccatcaatgtgt |
51933270 |
T |
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| Q |
401 |
aaatttgtttttgttcgcatgtattatgattgaggtt-cccctctttaaacaagggtccttcattttgcgttcctgggaatatttcatcctcttcaaaaa |
499 |
Q |
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| T |
51933269 |
aaatttgtttttgttcgcatgtattatgattgaggttccccctctttaaacaagggtccttcattttgcgttcctgggaatatttcatcctcttcaaaaa |
51933170 |
T |
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| Q |
500 |
ggattattcgtataagaatgtttatcccacatagcgg |
536 |
Q |
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| T |
51933169 |
ggattattcgtataagaatgtttatcccgcatagcgg |
51933133 |
T |
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