View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4825-Insertion-1 (Length: 931)

Name: NF4825-Insertion-1
Description: NF4825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4825-Insertion-1
NF4825-Insertion-1
[»] chr3 (6 HSPs)
chr3 (221-561)||(12749565-12749907)
chr3 (8-220)||(12749322-12749534)
chr3 (669-885)||(12750017-12750232)
chr3 (766-856)||(10793666-10793756)
chr3 (766-834)||(43491981-43492049)
chr3 (766-856)||(51683907-51683996)
[»] scaffold0643 (1 HSPs)
scaffold0643 (171-220)||(1111-1160)
[»] chr2 (2 HSPs)
chr2 (171-220)||(14231086-14231135)
chr2 (171-218)||(511241-511288)
[»] chr5 (4 HSPs)
chr5 (163-211)||(40299957-40300005)
chr5 (166-220)||(29754982-29755036)
chr5 (165-220)||(22864526-22864581)
chr5 (168-206)||(26683537-26683575)
[»] chr6 (1 HSPs)
chr6 (171-220)||(30140966-30141015)
[»] chr1 (3 HSPs)
chr1 (171-220)||(47726326-47726375)
chr1 (171-220)||(47747632-47747681)
chr1 (771-868)||(50399883-50399980)
[»] chr8 (2 HSPs)
chr8 (803-855)||(20684161-20684213)
chr8 (766-835)||(7503986-7504055)
[»] chr7 (1 HSPs)
chr7 (766-838)||(2916195-2916267)
[»] chr4 (3 HSPs)
chr4 (171-220)||(27066374-27066423)
chr4 (171-220)||(27087475-27087524)
chr4 (171-216)||(54027734-54027779)


Alignment Details
Target: chr3 (Bit Score: 298; Significance: 1e-167; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 221 - 561
Target Start/End: Original strand, 12749565 - 12749907
Alignment:
Q  221 agcactttcctttcaaaagaaaaaccgcttagaaggatcggtacgaatttgtttatattttacaaagaaaatagtgcacgattgtaaaagattattatta 320  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  12749565 agcactttcctttcaaaagaaaaaccgcttagaaggatcggtacgaatttgtttatattttacaaagaaaatagtgcacgattgtaaaagattactatta 12749664  T
Q  321 taatttttt-aatttatgtaaaacaaagcatgttttcatttgactataaaa-gtactttttctttcaaaaaagttgtttaaaccttttcaagaaaaatcc 418  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  12749665 taatttttttaatttatgtaaaacaaagcatgttttcatttgactataaaaagtactttttctttcaaaaaagttgtttaaaccttttcaagaaaaatcc 12749764  T
Q  419 actcaatctaacttttataaaacttaaaaatatgactcgtcagattttattttgatttgaaagcttcagtaaacaactatcacttttttgaagtggtaga 518  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12749765 actcaatctaacttttataaaacttaaaaatatgactagtcagattttattttgatttgaaagcttcagtaaacaactatcacttttttgaagtggtaga 12749864  T
Q  519 nnnnnnnatgggggaagagatagttttaaataaaacgtggtgg 561  Q
           ||||||||||||||||||||||||||||||||||||    
T  12749865 tttttttatgggggaagagatagttttaaataaaacgtggtgg 12749907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 181; E-Value: 3e-97
Query Start/End: Original strand, 8 - 220
Target Start/End: Original strand, 12749322 - 12749534
Alignment:
Q  8 cctagctctcctcatgacccaacaataaatttggtttaacaatatgatgatagagttatggagcaaagttataaacatggtcttgagttcgatttccaca 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||| ||||||||||||||||||||||    
T  12749322 cctagctctcctcatgacccaacaataaatttggtttaacaatatgatggtagacttatggagcaaagtgataaacagggtcttgagttcgatttccaca 12749421  T
Q  108 tcaagtaagcattaacaaattaacatactaacgttatgtgtttagaaaaattgcttagaagaggccacatttctcgctagtcccgttatttattttcatg 207  Q
    || |||||||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  12749422 tcgagtaagcattaacaaattaacatactaacgttgtgtgtttagaaaaatcgcttaaaagaggccacatttctcgctagtcccgttatttattttcatg 12749521  T
Q  208 tacctaattgtat 220  Q
    |||||||||||||    
T  12749522 tacctaattgtat 12749534  T

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Target: chr3; HSP #3
Raw Score: 137; E-Value: 5e-71
Query Start/End: Original strand, 669 - 885
Target Start/End: Original strand, 12750017 - 12750232
Alignment:
Q  669 tccccaacaattcagagcccggtggttgtattattgagaattttcatttaaaaagtattgnnnnnnnntattcaatagcacttataacgacatactttta 768  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||        |||||||||||||||||| |||||||||||||    
T  12750017 tccccaacaattcagagcccggtggttgtattattgacaattttcatttaaaaagtattgaaaaaaaatattcaatagcacttatagcgacatactttta 12750116  T
Q  769 agttgtagctaaatatatgagcaatgttataaaaatgacttttgtctatagataaatagacatttacctataaacaatacataattgaaagcgaaattat 868  Q
    |||||||| |||||||| |||||||||| |||||||||||||| |||||||| || |||||||||| |||| ||||||||||||| |||||||| |||||    
T  12750117 agttgtagttaaatatacgagcaatgttttaaaaatgacttttatctatagacaagtagacatttatctatgaacaatacataatggaaagcgacattat 12750216  T
Q  869 gtattcccaaacttttt 885  Q
    ||||| |||||||||||    
T  12750217 gtatt-ccaaacttttt 12750232  T

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Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 766 - 856
Target Start/End: Original strand, 10793666 - 10793756
Alignment:
Q  766 ttaagttgtagctaaatatatgagcaatgttataaaaatgacttttgtctatagataaatagacatttacctataaacaatacataattga 856  Q
    ||||||| ||| ||||||||||||||||| |  ||| |||||||||  |||||||||||||||||||||||||| || | | |||||||||    
T  10793666 ttaagttttagttaaatatatgagcaatgattcaaacatgacttttacctatagataaatagacatttacctatgaatagtgcataattga 10793756  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 766 - 834
Target Start/End: Complemental strand, 43492049 - 43491981
Alignment:
Q  766 ttaagttgtagctaaatatatgagcaatgttataaaaatgacttttgtctatagataaatagacattta 834  Q
    ||||||||||| |||||||||||| | |  | |||| ||||||||| |||| |||||||||||||||||    
T  43492049 ttaagttgtagttaaatatatgagtattaatttaaatatgacttttatctacagataaatagacattta 43491981  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 766 - 856
Target Start/End: Complemental strand, 51683996 - 51683907
Alignment:
Q  766 ttaagttgtagctaaatatatgagcaatgttataaaaatgacttttgtctatagataaatagacatttacctataaacaatacataattga 856  Q
    ||||||||||| ||||| ||||| ||||| | |||| |||||||||  ||| |||||||||| |||||| ||||| ||||| || ||||||    
T  51683996 ttaagttgtagttaaatgtatgaacaatgat-taaatatgacttttacctacagataaataggcatttatctatagacaatgcacaattga 51683907  T

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Target: scaffold0643 (Bit Score: 38; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0643
Description:

Target: scaffold0643; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 171 - 220
Target Start/End: Original strand, 1111 - 1160
Alignment:
Q  171 gccacatttctcgctagtcccgttatttattttcatgtacctaattgtat 220  Q
    |||||||||||||||||||||| ||||||||||||| |||| ||||||||    
T  1111 gccacatttctcgctagtcccgctatttattttcatatacccaattgtat 1160  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 171 - 220
Target Start/End: Original strand, 14231086 - 14231135
Alignment:
Q  171 gccacatttctcgctagtcccgttatttattttcatgtacctaattgtat 220  Q
    |||||||||||||||||||||||||| ||||||||| |||| ||||||||    
T  14231086 gccacatttctcgctagtcccgttatctattttcatatacccaattgtat 14231135  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 171 - 218
Target Start/End: Complemental strand, 511288 - 511241
Alignment:
Q  171 gccacatttctcgctagtcccgttatttattttcatgtacctaattgt 218  Q
    |||||||||||||||||||||| ||||||||||||| |||| ||||||    
T  511288 gccacatttctcgctagtcccgctatttattttcatatacccaattgt 511241  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 163 - 211
Target Start/End: Original strand, 40299957 - 40300005
Alignment:
Q  163 tagaagaggccacatttctcgctagtcccgttatttattttcatgtacc 211  Q
    |||||||||||||||||||||||||| ||||| ||||||||||| ||||    
T  40299957 tagaagaggccacatttctcgctagttccgttgtttattttcatatacc 40300005  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 220
Target Start/End: Complemental strand, 29755036 - 29754982
Alignment:
Q  166 aagaggccacatttctcgctagtcccgttatttattttcatgtacctaattgtat 220  Q
    |||| |||||||||||||||||||||| ||| ||||||||| |||| ||||||||    
T  29755036 aagaagccacatttctcgctagtcccgctatctattttcatatacccaattgtat 29754982  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 220
Target Start/End: Complemental strand, 22864581 - 22864526
Alignment:
Q  165 gaagaggccacatttctcgctagtcccgttatttattttcatgtacctaattgtat 220  Q
    |||||||||| |||| |||||||||||| ||||| |||| || |||||||||||||    
T  22864581 gaagaggccatatttatcgctagtcccgctatttgtttttatatacctaattgtat 22864526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 206
Target Start/End: Original strand, 26683537 - 26683575
Alignment:
Q  168 gaggccacatttctcgctagtcccgttatttattttcat 206  Q
    |||||||||||||| |||||||||| |||||||||||||    
T  26683537 gaggccacatttcttgctagtcccgctatttattttcat 26683575  T

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Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 220
Target Start/End: Complemental strand, 30141015 - 30140966
Alignment:
Q  171 gccacatttctcgctagtcccgttatttattttcatgtacctaattgtat 220  Q
    |||||||||||||||||||||| ||| ||||||||| |||| ||||||||    
T  30141015 gccacatttctcgctagtcccgctatctattttcatatacccaattgtat 30140966  T

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Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 220
Target Start/End: Original strand, 47726326 - 47726375
Alignment:
Q  171 gccacatttctcgctagtcccgttatttattttcatgtacctaattgtat 220  Q
    |||||||||||||||||||||  ||||||||||||| |||| ||||||||    
T  47726326 gccacatttctcgctagtcccactatttattttcatatacccaattgtat 47726375  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 220
Target Start/End: Original strand, 47747632 - 47747681
Alignment:
Q  171 gccacatttctcgctagtcccgttatttattttcatgtacctaattgtat 220  Q
    |||||||||||||||||||||  ||||||||||||| |||| ||||||||    
T  47747632 gccacatttctcgctagtcccactatttattttcatatacccaattgtat 47747681  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 771 - 868
Target Start/End: Original strand, 50399883 - 50399980
Alignment:
Q  771 ttgtagctaaatatatgagcaatgttataaaaatgacttttgtctatagataaatagacatttacctataaacaatacataattgaaagcgaaattat 868  Q
    |||||| ||||||||||||||||| |   || |||| |||| |||| ||| ||||||||||||||||||  | |||  |||||||| ||| |||||||    
T  50399883 ttgtagttaaatatatgagcaatggttctaacatgatttttatctacagaaaaatagacatttacctatggataatttataattgatagcaaaattat 50399980  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 803 - 855
Target Start/End: Complemental strand, 20684213 - 20684161
Alignment:
Q  803 atgacttttgtctatagataaatagacatttacctataaacaatacataattg 855  Q
    |||| |||| |||| |||||||||||||||||||||| |||||| ||||||||    
T  20684213 atgatttttatctacagataaatagacatttacctatgaacaatgcataattg 20684161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 766 - 835
Target Start/End: Complemental strand, 7504055 - 7503986
Alignment:
Q  766 ttaagttgtagctaaatatatgagcaatgttataaaaatgacttttgtctatagataaatagacatttac 835  Q
    ||||||||||| ||||||||||||||||| |  ||| |||| ||||  ||| ||||||||| ||||||||    
T  7504055 ttaagttgtagttaaatatatgagcaatggttcaaacatgatttttacctacagataaataaacatttac 7503986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 766 - 838
Target Start/End: Original strand, 2916195 - 2916267
Alignment:
Q  766 ttaagttgtagctaaatatatgagcaatgttataaaaatgacttttgtctatagataaatagacatttaccta 838  Q
    ||||||||||| |||||||||||| | || |  ||| ||||||||| |||| ||| |||||||||||||||||    
T  2916195 ttaagttgtagttaaatatatgagaattggttcaaacatgacttttatctacagacaaatagacatttaccta 2916267  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 220
Target Start/End: Complemental strand, 27066423 - 27066374
Alignment:
Q  171 gccacatttctcgctagtcccgttatttattttcatgtacctaattgtat 220  Q
    |||||||||||||||||||||| ||| ||||||||| |||  ||||||||    
T  27066423 gccacatttctcgctagtcccgctatctattttcatatactcaattgtat 27066374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 220
Target Start/End: Complemental strand, 27087524 - 27087475
Alignment:
Q  171 gccacatttctcgctagtcccgttatttattttcatgtacctaattgtat 220  Q
    |||||||||||||||||||||| ||| ||||||||| |||  ||||||||    
T  27087524 gccacatttctcgctagtcccgctatctattttcatatactcaattgtat 27087475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 216
Target Start/End: Complemental strand, 54027779 - 54027734
Alignment:
Q  171 gccacatttctcgctagtcccgttatttattttcatgtacctaatt 216  Q
    |||||||||||||||| ||||| ||||||||||||| |||| ||||    
T  54027779 gccacatttctcgctactcccgctatttattttcatatacccaatt 54027734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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