View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4825-Insertion-4 (Length: 318)
Name: NF4825-Insertion-4
Description: NF4825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4825-Insertion-4 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 7 - 318
Target Start/End: Complemental strand, 45524799 - 45524488
Alignment:
| Q |
7 |
aataatatgaatggaaatttcatagcatatataagaaaaggactagacttacgggacaacagcagcatcagaaattttgggatgagagagaagaagagct |
106 |
Q |
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| T |
45524799 |
aataatatgaatggaaatttcatagcatatataagaaaaggactagacttacgggacaacagcagcatcagaaattttgggatgagacagaagaagagct |
45524700 |
T |
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| Q |
107 |
tcaagttcagctggagcaacttgaaatcctttgtatttgattaattccttcaatctatcaacaatgaataactcatcatcttcatcaatatacccaatat |
206 |
Q |
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| T |
45524699 |
tcaagttcagctggagcaacttgaaatcctttgtatttgattaattccttcaatctatcaacaatgaataactcatcatcttcatcaatatacccaatat |
45524600 |
T |
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| Q |
207 |
cacctgtatacaaccaaccttctttgtctatggttctctctgttgcctccagatcatttagataacctgcatttcacttgttcatacatagttaatacaa |
306 |
Q |
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| T |
45524599 |
cacctgtatacaaccaaccttctttgtctatggttctctctgttgcctccagatcatttagataacctgcatttcacttgttcatacatagttaatacaa |
45524500 |
T |
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| Q |
307 |
atttttcataat |
318 |
Q |
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| T |
45524499 |
atttttcataat |
45524488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 53 - 237
Target Start/End: Complemental strand, 352246 - 352062
Alignment:
| Q |
53 |
acttacgggacaacagcagcatcagaaattttgggatgagagagaagaagagcttcaagttcagctggagcaacttgaaatcctttgtatttgattaatt |
152 |
Q |
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| T |
352246 |
acttacgggacgacagcgacatcggaaatttgaggatgtgagagaataatggcttcaagttcagctggagcaacttgaaaacctttgtatttaatcaatt |
352147 |
T |
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| Q |
153 |
ccttcaatctatcaacaatgaataactcatcatcttcatcaatatacccaatatcacctgtatacaaccaaccttctttgtctat |
237 |
Q |
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| T |
352146 |
ctttaagtctatcaactatgaacaactcatcatcatcgtcaatgaatccaatgtcaccagtatgcaaccaaccttccttgtctat |
352062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 53 - 255
Target Start/End: Complemental strand, 53458577 - 53458375
Alignment:
| Q |
53 |
acttacgggacaacagcagcatcagaaattttgggatgagagagaagaagagcttcaagttcagctggagcaacttgaaatcctttgtatttgattaatt |
152 |
Q |
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| T |
53458577 |
acttacggtacgacagcagcatcagaaatgtttggatgagcaatcaacaatgcttcgagctcagcaggagctacttggtatcctttgtatttaatcaatt |
53458478 |
T |
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| Q |
153 |
ccttcaatctatcaacaatgaataactcatcatcttcatcaatatacccaatatcacctgtatacaaccaaccttctttgtctatggttctctctgttgc |
252 |
Q |
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| T |
53458477 |
cctttaatcgatcaacaatgaagagttcgtcgtcgtcgtcaattaaaccaatgtcacctgtttgtagccatccttctttgtctatagttctctttgtcgc |
53458378 |
T |
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| Q |
253 |
ctc |
255 |
Q |
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||| |
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| T |
53458377 |
ctc |
53458375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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