View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4825_high_16 (Length: 216)

Name: NF4825_high_16
Description: NF4825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4825_high_16
NF4825_high_16
[»] chr5 (12 HSPs)
chr5 (1-216)||(37429534-37429749)
chr5 (26-198)||(37697605-37697777)
chr5 (26-198)||(37399982-37400154)
chr5 (10-198)||(37824697-37824885)
chr5 (10-198)||(37533902-37534090)
chr5 (10-198)||(37712426-37712614)
chr5 (10-198)||(37640674-37640862)
chr5 (12-198)||(37436511-37436697)
chr5 (26-198)||(37595142-37595314)
chr5 (10-198)||(37703470-37703658)
chr5 (44-132)||(37412512-37412600)
chr5 (33-120)||(37381583-37381670)
[»] chr4 (2 HSPs)
chr4 (83-198)||(24216910-24217025)
chr4 (10-198)||(16842046-16842234)
[»] chr3 (1 HSPs)
chr3 (10-198)||(14553840-14554028)


Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 37429534 - 37429749
Alignment:
Q  1 attacagtttgaaaggcctaaatgtgtaagatacttcaaattgcctatggaatagggaatttcatccgagaaggcagtgtatgagaggtccaagtacctt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  37429534 attacagtttgaaaggcctaaatgtgtaagatacttcaaattgcctatggaatagggaatttcatccgagaaggcggtgtatgagaggtccaagtacctt 37429633  T
Q  101 aggggagtgctccagttggacagtggaagtttcccactaaggtcctcattaaaagacaaatctagttcttgaagatttggtaaagagaggatgtcactag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37429634 aggggagtgctccagttggacagtggaagtttcccactaaggtcctcattaaaagacaaatctagttcttgaagatttggtaaagagaggatgtcactag 37429733  T
Q  201 cttggaaaattttctt 216  Q
    ||||||||||||||||    
T  37429734 cttggaaaattttctt 37429749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 26 - 198
Target Start/End: Original strand, 37697605 - 37697777
Alignment:
Q  26 gtaagatacttcaaattgcctatggaatagggaatttcatccgagaaggcagtgtatgagaggtccaagtaccttaggggagtgctccagttggacagtg 125  Q
    |||||||||||||| |  ||||||||||| ||||||||| | ||||| |||||||| |||||||| ||||||||||| ||||||||||||||||||  ||    
T  37697605 gtaagatacttcaattgacctatggaataaggaatttcacctgagaaagcagtgtaagagaggtctaagtaccttagaggagtgctccagttggactttg 37697704  T
Q  126 gaagtttcccactaaggtcctcattaaaagacaaatctagttcttgaagatttggtaaagagaggatgtcact 198  Q
    ||||||  ||||||||||  | |||||| |||||||| | |  ||||||||| ||||||||||||||||||||    
T  37697705 gaagttgaccactaaggttttgattaaatgacaaatccaatctttgaagattaggtaaagagaggatgtcact 37697777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 26 - 198
Target Start/End: Complemental strand, 37400154 - 37399982
Alignment:
Q  26 gtaagatacttcaaattgcctatggaatagggaatttcatccgagaaggcagtgtatgagaggtccaagtaccttaggggagtgctccagttggacagtg 125  Q
    |||||||||||||| | |||||||||||||||||||||| | || || |||| | | |||||| ||||||||||||| ||||||||||||||||||  ||    
T  37400154 gtaagatacttcaattggcctatggaatagggaatttcacctgaaaaagcagaggaagagaggaccaagtaccttagaggagtgctccagttggactttg 37400055  T
Q  126 gaagtttcccactaaggtcctcattaaaagacaaatctagttcttgaagatttggtaaagagaggatgtcact 198  Q
    ||||||  ||||||||||  | |||||| |||||||| | |  ||||||||| ||||||||||||||||||||    
T  37400054 gaagttgaccactaaggttttgattaaatgacaaatccaatctttgaagattaggtaaagagaggatgtcact 37399982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 10 - 198
Target Start/End: Original strand, 37824697 - 37824885
Alignment:
Q  10 tgaaaggcctaaatgtgtaagatacttcaaattgcctatggaatagggaatttcatccgagaaggcagtgtatgagaggtccaagtaccttaggggagtg 109  Q
    ||||||| |||| || |||||| ||||||| |  ||||||||||| ||||||||| | || || |||| | | |||||||||||||||||||| ||||||    
T  37824697 tgaaaggtctaattgagtaagagacttcaattgacctatggaataaggaatttcacctgaaaaagcagaggaagagaggtccaagtaccttagaggagtg 37824796  T
Q  110 ctccagttggacagtggaagtttcccactaaggtcctcattaaaagacaaatctagttcttgaagatttggtaaagagaggatgtcact 198  Q
    ||||||||||||  ||||||||  ||||||||||  | |||||| |||||||| | |  ||||||||| ||||||||||||||||||||    
T  37824797 ctccagttggactttggaagttgaccactaaggttatgattaaatgacaaatccaatctttgaagattaggtaaagagaggatgtcact 37824885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 10 - 198
Target Start/End: Original strand, 37533902 - 37534090
Alignment:
Q  10 tgaaaggcctaaatgtgtaagatacttcaaattgcctatggaatagggaatttcatccgagaaggcagtgtatgagaggtccaagtaccttaggggagtg 109  Q
    ||||||| |||| || |||||| ||||||| |  ||||||||||| ||||||||| | || || |||| | | |||||| ||||||||||||| ||||||    
T  37533902 tgaaaggactaattgagtaagagacttcaattgacctatggaataaggaatttcacctgaaaaagcagagaaagagaggaccaagtaccttagaggagtg 37534001  T
Q  110 ctccagttggacagtggaagtttcccactaaggtcctcattaaaagacaaatctagttcttgaagatttggtaaagagaggatgtcact 198  Q
    ||||||||||||  ||||||||  ||||||||||  |||||| | |||||||| | |  ||||||||| ||||||||||||||||||||    
T  37534002 ctccagttggactttggaagttgaccactaaggttatcattagatgacaaatccaatctttgaagattaggtaaagagaggatgtcact 37534090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 10 - 198
Target Start/End: Original strand, 37712426 - 37712614
Alignment:
Q  10 tgaaaggcctaaatgtgtaagatacttcaaattgcctatggaatagggaatttcatccgagaaggcagtgtatgagaggtccaagtaccttaggggagtg 109  Q
    ||||||| |||| || |||||| ||||||| |  ||||||||||| ||||||||| | || || |||| | | |||||| ||||||||||||| ||||||    
T  37712426 tgaaaggactaattgagtaagagacttcaattgacctatggaataaggaatttcacctgaaaaagcagaggaagagaggaccaagtaccttagaggagtg 37712525  T
Q  110 ctccagttggacagtggaagtttcccactaaggtcctcattaaaagacaaatctagttcttgaagatttggtaaagagaggatgtcact 198  Q
    ||||||||||||  ||||||||  ||||||||||  | |||||| |||||||| | |  ||||||||| ||||||||||||||||||||    
T  37712526 ctccagttggactttggaagttgaccactaaggttttgattaaatgacaaatccaatctttgaagattaggtaaagagaggatgtcact 37712614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 10 - 198
Target Start/End: Original strand, 37640674 - 37640862
Alignment:
Q  10 tgaaaggcctaaatgtgtaagatacttcaaattgcctatggaatagggaatttcatccgagaaggcagtgtatgagaggtccaagtaccttaggggagtg 109  Q
    ||||||| |||| || |||||| ||||||| |  ||||||||||| ||||||||| | ||||| ||||   |   ||||| |||||||||||| ||||||    
T  37640674 tgaaaggactaattgagtaagagacttcaattgacctatggaataaggaatttcacctgagaaagcagataaacggaggttcaagtaccttagaggagtg 37640773  T
Q  110 ctccagttggacagtggaagtttcccactaaggtcctcattaaaagacaaatctagttcttgaagatttggtaaagagaggatgtcact 198  Q
    ||||||||||||  ||||||||  ||||||||||  | |||||| |||||||| | |  ||||||||| ||||||||||||||||||||    
T  37640774 ctccagttggactttggaagttgaccactaaggttttgattaaatgacaaatccaatctttgaagattaggtaaagagaggatgtcact 37640862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 12 - 198
Target Start/End: Original strand, 37436511 - 37436697
Alignment:
Q  12 aaaggcctaaatgtgtaagatacttcaaattgcctatggaatagggaatttcatccgagaaggcagtgtatgagaggtccaagtaccttaggggagtgct 111  Q
    ||||| |||| || |||||| ||||||| |  ||||||||||| ||||||||| | ||||| ||||   |   ||||| |||||||||||| ||||||||    
T  37436511 aaaggtctaattgagtaagagacttcaattgacctatggaataaggaatttcacctgagaaagcagataaacggaggttcaagtaccttagaggagtgct 37436610  T
Q  112 ccagttggacagtggaagtttcccactaaggtcctcattaaaagacaaatctagttcttgaagatttggtaaagagaggatgtcact 198  Q
    ||||||||||  ||||||||  ||||||||||  | |||||| |||||||| | |  ||||||||| ||||||||||||||||||||    
T  37436611 ccagttggactttggaagttgaccactaaggttttgattaaatgacaaatccaatctttgaagattaggtaaagagaggatgtcact 37436697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 26 - 198
Target Start/End: Original strand, 37595142 - 37595314
Alignment:
Q  26 gtaagatacttcaaattgcctatggaatagggaatttcatccgagaaggcagtgtatgagaggtccaagtaccttaggggagtgctccagttggacagtg 125  Q
    |||||||||||||| |  ||||||||||| ||||||||| | || || ||||   |   ||||| |||||||||||| ||||||||| ||||||||  ||    
T  37595142 gtaagatacttcaattgacctatggaataaggaatttcacctgaaaaagcagataaacggaggttcaagtaccttagaggagtgctcaagttggactttg 37595241  T
Q  126 gaagtttcccactaaggtcctcattaaaagacaaatctagttcttgaagatttggtaaagagaggatgtcact 198  Q
    ||||||  ||||||||||  |||||||| |||||||| | |  ||||||||| ||||||||||||||||||||    
T  37595242 gaagttgaccactaaggttatcattaaatgacaaatccaatctttgaagattaggtaaagagaggatgtcact 37595314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 10 - 198
Target Start/End: Original strand, 37703470 - 37703658
Alignment:
Q  10 tgaaaggcctaaatgtgtaagatacttcaaattgcctatggaatagggaatttcatccgagaaggcagtgtatgagaggtccaagtaccttaggggagtg 109  Q
    ||||||| |||| || |||||| ||||||| |  ||||||||||| ||||||||| | || || |||| | | ||||||| |||||| ||||| |||| |    
T  37703470 tgaaaggtctaattgagtaagagacttcaattgacctatggaataaggaatttcacctgaaaaagcagaggaagagaggttcaagtatcttagaggagag 37703569  T
Q  110 ctccagttggacagtggaagtttcccactaaggtcctcattaaaagacaaatctagttcttgaagatttggtaaagagaggatgtcact 198  Q
    |||||||||||   ||||||||  ||||||||||  | ||| || |||||||| | |  ||||||||| ||||||||||||||||||||    
T  37703570 ctccagttggattttggaagttgaccactaaggttataattgaatgacaaatccaatctttgaagattaggtaaagagaggatgtcact 37703658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 44 - 132
Target Start/End: Complemental strand, 37412600 - 37412512
Alignment:
Q  44 cctatggaatagggaatttcatccgagaaggcagtgtatgagaggtccaagtaccttaggggagtgctccagttggacagtggaagttt 132  Q
    ||||||||||| ||||||||| | |||||   |||  | ||||| |||||||||||||| ||||||||||||||| ||| |||||||||    
T  37412600 cctatggaataaggaatttcacctgagaaaaaagttaaagagagatccaagtaccttagaggagtgctccagttgaacattggaagttt 37412512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 120
Target Start/End: Complemental strand, 37381670 - 37381583
Alignment:
Q  33 acttcaaattgcctatggaatagggaatttcatccgagaaggcagtgtatgagaggtccaagtaccttaggggagtgctccagttgga 120  Q
    ||||||| | |||||||||||| ||||||||| | ||||| |  |||   ||||||||||||||||| |  |||||||||||||||||    
T  37381670 acttcaactggcctatggaataaggaatttcacctgagaaaggggtgcgagagaggtccaagtacctcaaaggagtgctccagttgga 37381583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 6e-33; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 83 - 198
Target Start/End: Complemental strand, 24217025 - 24216910
Alignment:
Q  83 gagaggtccaagtaccttaggggagtgctccagttggacagtggaagtttcccactaaggtcctcattaaaagacaaatctagttcttgaagatttggta 182  Q
    |||||||||||||||||||||||||||||||||||||||  ||||| ||| |||| |||||| | |||  | ||||||||||||| ||||||||||||||    
T  24217025 gagaggtccaagtaccttaggggagtgctccagttggacgttggaaatttaccacgaaggtcttgattcgatgacaaatctagtttttgaagatttggta 24216926  T
Q  183 aagagaggatgtcact 198  Q
    ||||||||||||||||    
T  24216925 aagagaggatgtcact 24216910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 10 - 198
Target Start/End: Complemental strand, 16842234 - 16842046
Alignment:
Q  10 tgaaaggcctaaatgtgtaagatacttcaaattgcctatggaatagggaatttcatccgagaaggcagtgtatgagaggtccaagtaccttaggggagtg 109  Q
    ||||||| ||||||| |||||| |||| || |  |||||||||||||  |||||  | ||||| ||||| |  ||||||| |||||||||||| ||||||    
T  16842234 tgaaaggactaaatgagtaagagactttaattgacctatggaataggagatttctcctgagaaagcagtatgagagaggtacaagtaccttagaggagtg 16842135  T
Q  110 ctccagttggacagtggaagtttcccactaaggtcctcattaaaagacaaatctagttcttgaagatttggtaaagagaggatgtcact 198  Q
    |||||||||||   ||||||||  ||||||||||| | ||||   ||||||||||||  |||||||||||  |||||||| ||||||||    
T  16842134 ctccagttggattttggaagttgaccactaaggtcttgattatgtgacaaatctagtctttgaagatttgacaaagagagtatgtcact 16842046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 10 - 198
Target Start/End: Original strand, 14553840 - 14554028
Alignment:
Q  10 tgaaaggcctaaatgtgtaagatacttcaaattgcctatggaatagggaatttcatccgagaaggcagtgtatgagaggtccaagtaccttaggggagtg 109  Q
    ||||||| ||||||| |||||| ||||||| |  ||||||||||| ||||||||| | ||||| |||| |||   ||||| |||||||||||| |||||     
T  14553840 tgaaaggactaaatgagtaagagacttcaattgacctatggaataaggaatttcacctgagaaagcagagtaatggaggtacaagtaccttagaggagta 14553939  T
Q  110 ctccagttggacagtggaagtttcccactaaggtcctcattaaaagacaaatctagttcttgaagatttggtaaagagaggatgtcact 198  Q
    |||||||||||   ||||||||  ||||||||  | ||||||     ||||||||||| |||||||||||| |||||||| ||||||||    
T  14553940 ctccagttggattttggaagttgaccactaagaccatcattacctaccaaatctagtttttgaagatttggcaaagagagtatgtcact 14554028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University