View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4825_high_2 (Length: 481)
Name: NF4825_high_2
Description: NF4825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4825_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 389; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 15 - 438
Target Start/End: Complemental strand, 51766943 - 51766523
Alignment:
| Q |
15 |
cattaactacaatttgtatttagctatatgttgattttgtacttcaattaattactatccataaaattctgaaatctctcttattagaactttcacacac |
114 |
Q |
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| T |
51766943 |
cattaactacaatttgtatttagctatatgttgattttgtacttcaattaattactatccataaaattctgaaatctctctta---gaactttcacacac |
51766847 |
T |
|
| Q |
115 |
atcagaactttgggcttgagaacctcaggaaattttcattgcagtgaaaatcaagttgagcagtgtgttgattgccaacagtgacagccatatgggaatg |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51766846 |
atcagaactttgggcttgagaacctcaggaaattttcattgcagtgaaaatcaagttgagcagtgtgttgattgccaacagtgacagccatatgggaatg |
51766747 |
T |
|
| Q |
215 |
taagtgctctatgactatgttatgataagtatctatagtataattatatacgtcaccatatctctttactttttccctctatacnnnnnnnctaatacat |
314 |
Q |
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| T |
51766746 |
taagtgctctatgactatgttatgataagtatctatagtataattatatacgtcaccatatctctttactttttccctctatactttttttctaatacat |
51766647 |
T |
|
| Q |
315 |
gaaaaagttaagagaggtgtagcatcagaaaggcttaattccagctcacaaaggtgtaatgactcccttttattagtgtcaaccaaagtatgttttgtca |
414 |
Q |
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| T |
51766646 |
gaaaaagttaagagaggtgtagcatcagaaaggcttaattccagctcacaaaggtgtaatgactcccttttattagtgtcaaccaaagtatgttttgtca |
51766547 |
T |
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| Q |
415 |
taaacattcaatcttcaaactctt |
438 |
Q |
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| T |
51766546 |
taaacattcaatcttcaaactctt |
51766523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 306 - 393
Target Start/End: Complemental strand, 51754775 - 51754688
Alignment:
| Q |
306 |
ctaatacatgaaaaagttaagagaggtgtagcatcagaaaggcttaattccagctcacaaaggtgtaatgactcccttttattagtgt |
393 |
Q |
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| T |
51754775 |
ctaatacatgaaaaagttaagagaggtgtagcatcacaaaggcttaattccagctcacaatgctttaattactcccttttatcagtgt |
51754688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 69; Significance: 9e-31; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 349 - 421
Target Start/End: Original strand, 5522220 - 5522292
Alignment:
| Q |
349 |
ttaattccagctcacaaaggtgtaatgactcccttttattagtgtcaaccaaagtatgttttgtcataaacat |
421 |
Q |
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| T |
5522220 |
ttaattccagctcacaaaggtgtaatgactcccttttattagtgtcaaccaaagtatgtttggtcataaacat |
5522292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 415 - 472
Target Start/End: Original strand, 5522355 - 5522412
Alignment:
| Q |
415 |
taaacattcaatcttcaaactcttgaattactatttcccctttagtcttcttgatgat |
472 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
5522355 |
taaacattcaatcttcaaactcttgaattactatttcccctttagtcttcatgatgat |
5522412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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