View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4825_high_3 (Length: 426)
Name: NF4825_high_3
Description: NF4825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4825_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 92 - 408
Target Start/End: Complemental strand, 49524 - 49208
Alignment:
| Q |
92 |
gatgctcttatcatgtggatgctaagccgatttatataggagcttcgtttcagttgtcactacttcctcgtcgcacattattggttttaaagcctcaaac |
191 |
Q |
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| T |
49524 |
gatgctcttatcatgtggatgctaagccgatttatataggagcttcgtttcagttgtcactacttcctcatcgcacattataggttttaaagcctcgaac |
49425 |
T |
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| Q |
192 |
taggcaggattgcaggtttaagaatcacaagtccttgcaacaatatcacatttttggttgcttggctaaatggagagtagtgggtggtcttgccaagttg |
291 |
Q |
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| T |
49424 |
taggcaagattgcaggttcaagaatcacaagtccttgcaacaatatcacatttttggttgcttggctaaatggagagtagtgggtggtcttgccaagttg |
49325 |
T |
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| Q |
292 |
gttgaatgtgtgttgggagattatgagcaatttggtgtgagttatggtgggaattattttgaggataaaaacaaaagaagggtcataatatcaaacaata |
391 |
Q |
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| T |
49324 |
gttgaatgtgagttgggagattatgagcaatttggtgtgagttatggagaagattattttgaggataaagacaaaagaagggtcataatatcaaacaata |
49225 |
T |
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| Q |
392 |
cttatgtatggttgcag |
408 |
Q |
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| T |
49224 |
cttatctatggttgcag |
49208 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 42083512 - 42083552
Alignment:
| Q |
1 |
catcatggtaagtactatccacaagttctgctcgttcacca |
41 |
Q |
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| T |
42083512 |
catcatggtaagtactatccacaagtactgcgcgtacacca |
42083552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 268
Target Start/End: Original strand, 35150071 - 35150119
Alignment:
| Q |
220 |
aagtccttgcaacaatatcacatttttggttgcttggctaaatggagag |
268 |
Q |
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| T |
35150071 |
aagtccttgtaacaacatcacattttcagttgtttggctaaatggagag |
35150119 |
T |
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