View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4825_low_1 (Length: 608)
Name: NF4825_low_1
Description: NF4825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4825_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 538; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 538; E-Value: 0
Query Start/End: Original strand, 11 - 589
Target Start/End: Original strand, 43078197 - 43078772
Alignment:
| Q |
11 |
catcatcatactagaaatgtgagtaaaaaatgtacccaaaaataaaaggtgt--gtaagaatctcatttattgatggagtaagtaaaagactatatagtt |
108 |
Q |
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| T |
43078197 |
catcatcatactagaaatgtgagtaaaaaatgtacccaaaaataaaaggtgtgtgtaagaatctcatttattgatggagtaagtaaaagactatatagtt |
43078296 |
T |
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| Q |
109 |
taattagggtaatgtacaaccaggatgaaaagagaccactaccttatttgaattcccactttagcaactctacattacatgtgtgtttggtgcaaatcca |
208 |
Q |
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| T |
43078297 |
taattagggtaatgtacaaccaggatgaaaagagaccactaccttatttgaattcccactttagcaactctacattacatgtgtgtttggtgcaaatcca |
43078396 |
T |
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| Q |
209 |
tgtgttacctttcaatacacacacaaactcacaaagtgctagaaaaatacactctgaagaataagaaaataaggtagcactttgaagggaaaagaatcct |
308 |
Q |
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| T |
43078397 |
tgtgttaccttccaatacacacacaaactcacaaagtgctagaaaaatacactctgaagaataagaaaataaggtagcactttgaatggaaaagaatcct |
43078496 |
T |
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| Q |
309 |
gccatcaaaactaattgtttttgtttgcttataaagttatagaaaaaggccttggtcctaagctacctaattctaaattttgatcaattctatatcttat |
408 |
Q |
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| T |
43078497 |
gccatcaaaactaattgtttttgtttgcttataaagttttagaaaaaggccttggtcctaagctacctaattctaaattttgatcaattctatatcttat |
43078596 |
T |
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| Q |
409 |
ttagctatagacacattggcatgcgcatgtgagtgcgttataatttgatgttgtattttttgttctcattctattctattctattgggtccaccaccatt |
508 |
Q |
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| T |
43078597 |
ttagctatagacacattggcatgcgcatgtgagtgcgttataatttgatgttgtattttttgttctc-----attctattctattgggtccaccaccatt |
43078691 |
T |
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| Q |
509 |
atcaggactgtattctatggacaatacaaatgcacaggaccaggagcaagctatgcagggagggtagcatggtcaagggaa |
589 |
Q |
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| T |
43078692 |
atcaggactgtattctatggacaatacaaatgcacaggaccaggagcaagctatgcagggagggtagcatggtcaagggaa |
43078772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 60; Significance: 3e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 502 - 585
Target Start/End: Complemental strand, 33962541 - 33962458
Alignment:
| Q |
502 |
caccattatcaggactgtattctatggacaatacaaatgcacaggaccaggagcaagctatgcagggagggtagcatggtcaag |
585 |
Q |
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| T |
33962541 |
caccactatcaggactgtattctatggacaatacaaatgcacaggacctggagcaagttttgcagggagagtatcatggtcaag |
33962458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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