View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4825_low_11 (Length: 238)
Name: NF4825_low_11
Description: NF4825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4825_low_11 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 7010468 - 7010688
Alignment:
| Q |
18 |
tcatcagaatcattggatttgacaatgttcgtcaagtgcagtgcattagtttcattgctcacacaccagcaacctactaagtttgatatatgcaccaccc |
117 |
Q |
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| T |
7010468 |
tcatcagaatcattggatttgacaatgttcgtcaagtgcagtgcattagtttcattgctcacacaccagcaacctactaagtttgatatatgcaccaccc |
7010567 |
T |
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| Q |
118 |
tttattactactttgtttgtacttgaccattgtaagaactatatttcccatttgttttatgttttttgatatttcatcatcttgtatttttggttaatat |
217 |
Q |
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| T |
7010568 |
tttattactactttgtttgtacttgaccattgtaagaactatatttcccatttgttttatgttttttgatatttcttcatcttgtatttttggttaatat |
7010667 |
T |
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| Q |
218 |
gtattcggatttcctttggaa |
238 |
Q |
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| T |
7010668 |
gtattcggatttcctttggaa |
7010688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 18 - 198
Target Start/End: Original strand, 7007390 - 7007571
Alignment:
| Q |
18 |
tcatcagaatcattggatttgacaatgttcgtcaagtgcagtgcattagtttcattgctcacacaccagcaacctactaagtttgatatatgcaccaccc |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
7007390 |
tcatcagaatcattggatttgacaatgttcgtcaagtgcagtgcattagtttcattgctcacacaccagcaacctactaagtttgatatttgcaccaccc |
7007489 |
T |
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| Q |
118 |
tttattactactttgtttgtacttgaccattgtaagaac--tatatttcccatttgttttatgttttttgatatttcatcatc |
198 |
Q |
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| T |
7007490 |
tttattactactttgtttgtacttgaccattgtaagaactatatatttcccatttg-tttatgttttttgatatttcatcatc |
7007571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 84
Target Start/End: Original strand, 1350827 - 1350885
Alignment:
| Q |
26 |
atcattggatttgacaatgttcgtcaagtgcagtgcattagtttcattgctcacacacc |
84 |
Q |
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| T |
1350827 |
atcatcggattcgacaacgttcgtcaagttcaatgcatcagtttcattgcacacacacc |
1350885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 84
Target Start/End: Original strand, 1358733 - 1358791
Alignment:
| Q |
26 |
atcattggatttgacaatgttcgtcaagtgcagtgcattagtttcattgctcacacacc |
84 |
Q |
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| T |
1358733 |
atcatcggattcgacaacgttcgtcaagttcaatgcatcagtttcattgcacacacacc |
1358791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 84
Target Start/End: Original strand, 1374285 - 1374343
Alignment:
| Q |
26 |
atcattggatttgacaatgttcgtcaagtgcagtgcattagtttcattgctcacacacc |
84 |
Q |
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| T |
1374285 |
atcatcggattcgacaacgttcgtcaagttcaatgcatcagtttcattgcacacacacc |
1374343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 84
Target Start/End: Original strand, 1384481 - 1384539
Alignment:
| Q |
26 |
atcattggatttgacaatgttcgtcaagtgcagtgcattagtttcattgctcacacacc |
84 |
Q |
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| T |
1384481 |
atcatcggattcgacaacgttcgtcaagttcaatgcatcagtttcattgcacacacacc |
1384539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 84
Target Start/End: Original strand, 1390586 - 1390644
Alignment:
| Q |
26 |
atcattggatttgacaatgttcgtcaagtgcagtgcattagtttcattgctcacacacc |
84 |
Q |
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| T |
1390586 |
atcatcggattcgacaacgttcgtcaagttcaatgcatcagtttcattgcacacacacc |
1390644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 84
Target Start/End: Original strand, 1394832 - 1394890
Alignment:
| Q |
26 |
atcattggatttgacaatgttcgtcaagtgcagtgcattagtttcattgctcacacacc |
84 |
Q |
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| T |
1394832 |
atcatcggattcgacaaagttcgtcaagttcaatgcatcagtttcattgcacacacacc |
1394890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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