View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4825_low_12 (Length: 237)
Name: NF4825_low_12
Description: NF4825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4825_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 2141413 - 2141178
Alignment:
| Q |
1 |
aaagtataaatcactttctctagacgttccaatccatgtttgtggtataattatgattattttctct------------aacataatgtttgatttgatt |
88 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
2141413 |
aaagtataaatcactttctctagacgttccaatccatgtttgtggtataattatgattattttctctgtggatatatataacataatgtttgatttgatt |
2141314 |
T |
|
| Q |
89 |
ataactatgtgatctaaattgctacatttat--gtaccaattcagaagattttgaaatcaatcaaccactttatagttattcaactcctgtatttataca |
186 |
Q |
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|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2141313 |
ataactatgtgatctaaattgctacattaatacgtaccaattcagaagattttgaaatcaatcaaccactttatagttattcaactcctgtatttataca |
2141214 |
T |
|
| Q |
187 |
agaggtcaacaattatacaaacatcagtataaaaag |
222 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
2141213 |
agaggtcaacaattatacaaacatcagtataaaaag |
2141178 |
T |
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