View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4825_low_18 (Length: 220)
Name: NF4825_low_18
Description: NF4825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4825_low_18 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 7 - 220
Target Start/End: Original strand, 36719745 - 36719967
Alignment:
| Q |
7 |
gtttgtccctctccacacgatataaagaagtatggtaatacagggtctaaccatcgccgagtaaaggattgatccaaggcacatagaag---------tc |
97 |
Q |
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| T |
36719745 |
gtttgtccctctccacacgatataaagaagtatggtaatacagggtctaaccatcgccgagtaaaggattgatccaaggcacatagaagtccattttctc |
36719844 |
T |
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| Q |
98 |
catttttcgaaggnnnnnnnnnnnnnccattttactcgtaatctcttacctccaaccaaccctatcataagctttactaacgcctattttaaaaaaccac |
197 |
Q |
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||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||| |
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| T |
36719845 |
catttttcgaaggaaaaaaaaaaaaaccattttactcgtaatctcttaccttcaaccaaccctatcataagctttgctaacgtctattttaaaaaaccac |
36719944 |
T |
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| Q |
198 |
ttccccagctttttccctagaat |
220 |
Q |
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||||||||||||||||||||||| |
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| T |
36719945 |
ttccccagctttttccctagaat |
36719967 |
T |
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