View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4825_low_19 (Length: 216)

Name: NF4825_low_19
Description: NF4825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4825_low_19
NF4825_low_19
[»] chr5 (12 HSPs)
chr5 (1-216)||(37429534-37429749)
chr5 (26-198)||(37697605-37697777)
chr5 (26-198)||(37399982-37400154)
chr5 (10-198)||(37824697-37824885)
chr5 (10-198)||(37533902-37534090)
chr5 (10-198)||(37712426-37712614)
chr5 (10-198)||(37640674-37640862)
chr5 (12-198)||(37436511-37436697)
chr5 (26-198)||(37595142-37595314)
chr5 (10-198)||(37703470-37703658)
chr5 (44-132)||(37412512-37412600)
chr5 (33-120)||(37381583-37381670)
[»] chr4 (2 HSPs)
chr4 (83-198)||(24216910-24217025)
chr4 (10-198)||(16842046-16842234)
[»] chr3 (1 HSPs)
chr3 (10-198)||(14553840-14554028)


Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 37429534 - 37429749
Alignment:
Q  1 attacagtttgaaaggcctaaatgtgtaagatacttcaaattgcctatggaatagggaatttcatccgagaaggcagtgtatgagaggtccaagtacctt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  37429534 attacagtttgaaaggcctaaatgtgtaagatacttcaaattgcctatggaatagggaatttcatccgagaaggcggtgtatgagaggtccaagtacctt 37429633  T
Q  101 aggggagtgctccagttggacagtggaagtttcccactaaggtcctcattaaaagacaaatctagttcttgaagatttggtaaagagaggatgtcactag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37429634 aggggagtgctccagttggacagtggaagtttcccactaaggtcctcattaaaagacaaatctagttcttgaagatttggtaaagagaggatgtcactag 37429733  T
Q  201 cttggaaaattttctt 216  Q
    ||||||||||||||||    
T  37429734 cttggaaaattttctt 37429749  T

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Target: chr5; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 26 - 198
Target Start/End: Original strand, 37697605 - 37697777
Alignment:
Q  26 gtaagatacttcaaattgcctatggaatagggaatttcatccgagaaggcagtgtatgagaggtccaagtaccttaggggagtgctccagttggacagtg 125  Q
    |||||||||||||| |  ||||||||||| ||||||||| | ||||| |||||||| |||||||| ||||||||||| ||||||||||||||||||  ||    
T  37697605 gtaagatacttcaattgacctatggaataaggaatttcacctgagaaagcagtgtaagagaggtctaagtaccttagaggagtgctccagttggactttg 37697704  T
Q  126 gaagtttcccactaaggtcctcattaaaagacaaatctagttcttgaagatttggtaaagagaggatgtcact 198  Q
    ||||||  ||||||||||  | |||||| |||||||| | |  ||||||||| ||||||||||||||||||||    
T  37697705 gaagttgaccactaaggttttgattaaatgacaaatccaatctttgaagattaggtaaagagaggatgtcact 37697777  T

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Target: chr5; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 26 - 198
Target Start/End: Complemental strand, 37400154 - 37399982
Alignment:
Q  26 gtaagatacttcaaattgcctatggaatagggaatttcatccgagaaggcagtgtatgagaggtccaagtaccttaggggagtgctccagttggacagtg 125  Q
    |||||||||||||| | |||||||||||||||||||||| | || || |||| | | |||||| ||||||||||||| ||||||||||||||||||  ||    
T  37400154 gtaagatacttcaattggcctatggaatagggaatttcacctgaaaaagcagaggaagagaggaccaagtaccttagaggagtgctccagttggactttg 37400055  T
Q  126 gaagtttcccactaaggtcctcattaaaagacaaatctagttcttgaagatttggtaaagagaggatgtcact 198  Q
    ||||||  ||||||||||  | |||||| |||||||| | |  ||||||||| ||||||||||||||||||||    
T  37400054 gaagttgaccactaaggttttgattaaatgacaaatccaatctttgaagattaggtaaagagaggatgtcact 37399982  T

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Target: chr5; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 10 - 198
Target Start/End: Original strand, 37824697 - 37824885
Alignment:
Q  10 tgaaaggcctaaatgtgtaagatacttcaaattgcctatggaatagggaatttcatccgagaaggcagtgtatgagaggtccaagtaccttaggggagtg 109  Q
    ||||||| |||| || |||||| ||||||| |  ||||||||||| ||||||||| | || || |||| | | |||||||||||||||||||| ||||||    
T  37824697 tgaaaggtctaattgagtaagagacttcaattgacctatggaataaggaatttcacctgaaaaagcagaggaagagaggtccaagtaccttagaggagtg 37824796  T
Q  110 ctccagttggacagtggaagtttcccactaaggtcctcattaaaagacaaatctagttcttgaagatttggtaaagagaggatgtcact 198  Q
    ||||||||||||  ||||||||  ||||||||||  | |||||| |||||||| | |  ||||||||| ||||||||||||||||||||    
T  37824797 ctccagttggactttggaagttgaccactaaggttatgattaaatgacaaatccaatctttgaagattaggtaaagagaggatgtcact 37824885  T

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Target: chr5; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 10 - 198
Target Start/End: Original strand, 37533902 - 37534090
Alignment:
Q  10 tgaaaggcctaaatgtgtaagatacttcaaattgcctatggaatagggaatttcatccgagaaggcagtgtatgagaggtccaagtaccttaggggagtg 109  Q
    ||||||| |||| || |||||| ||||||| |  ||||||||||| ||||||||| | || || |||| | | |||||| ||||||||||||| ||||||    
T  37533902 tgaaaggactaattgagtaagagacttcaattgacctatggaataaggaatttcacctgaaaaagcagagaaagagaggaccaagtaccttagaggagtg 37534001  T
Q  110 ctccagttggacagtggaagtttcccactaaggtcctcattaaaagacaaatctagttcttgaagatttggtaaagagaggatgtcact 198  Q
    ||||||||||||  ||||||||  ||||||||||  |||||| | |||||||| | |  ||||||||| ||||||||||||||||||||    
T  37534002 ctccagttggactttggaagttgaccactaaggttatcattagatgacaaatccaatctttgaagattaggtaaagagaggatgtcact 37534090  T

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Target: chr5; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 10 - 198
Target Start/End: Original strand, 37712426 - 37712614
Alignment:
Q  10 tgaaaggcctaaatgtgtaagatacttcaaattgcctatggaatagggaatttcatccgagaaggcagtgtatgagaggtccaagtaccttaggggagtg 109  Q
    ||||||| |||| || |||||| ||||||| |  ||||||||||| ||||||||| | || || |||| | | |||||| ||||||||||||| ||||||    
T  37712426 tgaaaggactaattgagtaagagacttcaattgacctatggaataaggaatttcacctgaaaaagcagaggaagagaggaccaagtaccttagaggagtg 37712525  T
Q  110 ctccagttggacagtggaagtttcccactaaggtcctcattaaaagacaaatctagttcttgaagatttggtaaagagaggatgtcact 198  Q
    ||||||||||||  ||||||||  ||||||||||  | |||||| |||||||| | |  ||||||||| ||||||||||||||||||||    
T  37712526 ctccagttggactttggaagttgaccactaaggttttgattaaatgacaaatccaatctttgaagattaggtaaagagaggatgtcact 37712614  T

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Target: chr5; HSP #7
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 10 - 198
Target Start/End: Original strand, 37640674 - 37640862
Alignment:
Q  10 tgaaaggcctaaatgtgtaagatacttcaaattgcctatggaatagggaatttcatccgagaaggcagtgtatgagaggtccaagtaccttaggggagtg 109  Q
    ||||||| |||| || |||||| ||||||| |  ||||||||||| ||||||||| | ||||| ||||   |   ||||| |||||||||||| ||||||    
T  37640674 tgaaaggactaattgagtaagagacttcaattgacctatggaataaggaatttcacctgagaaagcagataaacggaggttcaagtaccttagaggagtg 37640773  T
Q  110 ctccagttggacagtggaagtttcccactaaggtcctcattaaaagacaaatctagttcttgaagatttggtaaagagaggatgtcact 198  Q
    ||||||||||||  ||||||||  ||||||||||  | |||||| |||||||| | |  ||||||||| ||||||||||||||||||||    
T  37640774 ctccagttggactttggaagttgaccactaaggttttgattaaatgacaaatccaatctttgaagattaggtaaagagaggatgtcact 37640862  T

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Target: chr5; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 12 - 198
Target Start/End: Original strand, 37436511 - 37436697
Alignment:
Q  12 aaaggcctaaatgtgtaagatacttcaaattgcctatggaatagggaatttcatccgagaaggcagtgtatgagaggtccaagtaccttaggggagtgct 111  Q
    ||||| |||| || |||||| ||||||| |  ||||||||||| ||||||||| | ||||| ||||   |   ||||| |||||||||||| ||||||||    
T  37436511 aaaggtctaattgagtaagagacttcaattgacctatggaataaggaatttcacctgagaaagcagataaacggaggttcaagtaccttagaggagtgct 37436610  T
Q  112 ccagttggacagtggaagtttcccactaaggtcctcattaaaagacaaatctagttcttgaagatttggtaaagagaggatgtcact 198  Q
    ||||||||||  ||||||||  ||||||||||  | |||||| |||||||| | |  ||||||||| ||||||||||||||||||||    
T  37436611 ccagttggactttggaagttgaccactaaggttttgattaaatgacaaatccaatctttgaagattaggtaaagagaggatgtcact 37436697  T

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Target: chr5; HSP #9
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 26 - 198
Target Start/End: Original strand, 37595142 - 37595314
Alignment:
Q  26 gtaagatacttcaaattgcctatggaatagggaatttcatccgagaaggcagtgtatgagaggtccaagtaccttaggggagtgctccagttggacagtg 125  Q
    |||||||||||||| |  ||||||||||| ||||||||| | || || ||||   |   ||||| |||||||||||| ||||||||| ||||||||  ||    
T  37595142 gtaagatacttcaattgacctatggaataaggaatttcacctgaaaaagcagataaacggaggttcaagtaccttagaggagtgctcaagttggactttg 37595241  T
Q  126 gaagtttcccactaaggtcctcattaaaagacaaatctagttcttgaagatttggtaaagagaggatgtcact 198  Q
    ||||||  ||||||||||  |||||||| |||||||| | |  ||||||||| ||||||||||||||||||||    
T  37595242 gaagttgaccactaaggttatcattaaatgacaaatccaatctttgaagattaggtaaagagaggatgtcact 37595314  T

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Target: chr5; HSP #10
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 10 - 198
Target Start/End: Original strand, 37703470 - 37703658
Alignment:
Q  10 tgaaaggcctaaatgtgtaagatacttcaaattgcctatggaatagggaatttcatccgagaaggcagtgtatgagaggtccaagtaccttaggggagtg 109  Q
    ||||||| |||| || |||||| ||||||| |  ||||||||||| ||||||||| | || || |||| | | ||||||| |||||| ||||| |||| |    
T  37703470 tgaaaggtctaattgagtaagagacttcaattgacctatggaataaggaatttcacctgaaaaagcagaggaagagaggttcaagtatcttagaggagag 37703569  T
Q  110 ctccagttggacagtggaagtttcccactaaggtcctcattaaaagacaaatctagttcttgaagatttggtaaagagaggatgtcact 198  Q
    |||||||||||   ||||||||  ||||||||||  | ||| || |||||||| | |  ||||||||| ||||||||||||||||||||    
T  37703570 ctccagttggattttggaagttgaccactaaggttataattgaatgacaaatccaatctttgaagattaggtaaagagaggatgtcact 37703658  T

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Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 44 - 132
Target Start/End: Complemental strand, 37412600 - 37412512
Alignment:
Q  44 cctatggaatagggaatttcatccgagaaggcagtgtatgagaggtccaagtaccttaggggagtgctccagttggacagtggaagttt 132  Q
    ||||||||||| ||||||||| | |||||   |||  | ||||| |||||||||||||| ||||||||||||||| ||| |||||||||    
T  37412600 cctatggaataaggaatttcacctgagaaaaaagttaaagagagatccaagtaccttagaggagtgctccagttgaacattggaagttt 37412512  T

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Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 120
Target Start/End: Complemental strand, 37381670 - 37381583
Alignment:
Q  33 acttcaaattgcctatggaatagggaatttcatccgagaaggcagtgtatgagaggtccaagtaccttaggggagtgctccagttgga 120  Q
    ||||||| | |||||||||||| ||||||||| | ||||| |  |||   ||||||||||||||||| |  |||||||||||||||||    
T  37381670 acttcaactggcctatggaataaggaatttcacctgagaaaggggtgcgagagaggtccaagtacctcaaaggagtgctccagttgga 37381583  T

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Target: chr4 (Bit Score: 72; Significance: 6e-33; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 83 - 198
Target Start/End: Complemental strand, 24217025 - 24216910
Alignment:
Q  83 gagaggtccaagtaccttaggggagtgctccagttggacagtggaagtttcccactaaggtcctcattaaaagacaaatctagttcttgaagatttggta 182  Q
    |||||||||||||||||||||||||||||||||||||||  ||||| ||| |||| |||||| | |||  | ||||||||||||| ||||||||||||||    
T  24217025 gagaggtccaagtaccttaggggagtgctccagttggacgttggaaatttaccacgaaggtcttgattcgatgacaaatctagtttttgaagatttggta 24216926  T
Q  183 aagagaggatgtcact 198  Q
    ||||||||||||||||    
T  24216925 aagagaggatgtcact 24216910  T

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Target: chr4; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 10 - 198
Target Start/End: Complemental strand, 16842234 - 16842046
Alignment:
Q  10 tgaaaggcctaaatgtgtaagatacttcaaattgcctatggaatagggaatttcatccgagaaggcagtgtatgagaggtccaagtaccttaggggagtg 109  Q
    ||||||| ||||||| |||||| |||| || |  |||||||||||||  |||||  | ||||| ||||| |  ||||||| |||||||||||| ||||||    
T  16842234 tgaaaggactaaatgagtaagagactttaattgacctatggaataggagatttctcctgagaaagcagtatgagagaggtacaagtaccttagaggagtg 16842135  T
Q  110 ctccagttggacagtggaagtttcccactaaggtcctcattaaaagacaaatctagttcttgaagatttggtaaagagaggatgtcact 198  Q
    |||||||||||   ||||||||  ||||||||||| | ||||   ||||||||||||  |||||||||||  |||||||| ||||||||    
T  16842134 ctccagttggattttggaagttgaccactaaggtcttgattatgtgacaaatctagtctttgaagatttgacaaagagagtatgtcact 16842046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 10 - 198
Target Start/End: Original strand, 14553840 - 14554028
Alignment:
Q  10 tgaaaggcctaaatgtgtaagatacttcaaattgcctatggaatagggaatttcatccgagaaggcagtgtatgagaggtccaagtaccttaggggagtg 109  Q
    ||||||| ||||||| |||||| ||||||| |  ||||||||||| ||||||||| | ||||| |||| |||   ||||| |||||||||||| |||||     
T  14553840 tgaaaggactaaatgagtaagagacttcaattgacctatggaataaggaatttcacctgagaaagcagagtaatggaggtacaagtaccttagaggagta 14553939  T
Q  110 ctccagttggacagtggaagtttcccactaaggtcctcattaaaagacaaatctagttcttgaagatttggtaaagagaggatgtcact 198  Q
    |||||||||||   ||||||||  ||||||||  | ||||||     ||||||||||| |||||||||||| |||||||| ||||||||    
T  14553940 ctccagttggattttggaagttgaccactaagaccatcattacctaccaaatctagtttttgaagatttggcaaagagagtatgtcact 14554028  T

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