View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4825_low_4 (Length: 409)
Name: NF4825_low_4
Description: NF4825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4825_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 366; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 12 - 397
Target Start/End: Complemental strand, 377992 - 377607
Alignment:
| Q |
12 |
acatcatcagccgctgctcacatgtgataggtgattttggtcatagaaagtgatgtatgctttatatattaatattcttggatacaaacagattctagta |
111 |
Q |
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| T |
377992 |
acatcatcagccgctgctcacatgtgataggtgattttggttatagaaagtgatgtatgctttatatattaatattcttggatacagacagattctagta |
377893 |
T |
|
| Q |
112 |
tttttgttggaatgaagagacggtgtctggaaacctccatcaaattcatctttttgttatcctaacctttaaaccattcttcataagaagtacaattgaa |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |
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| T |
377892 |
tttttgttggaatgaagagacggtgtctggaaacctccatcaaattcatctttttgttatcctaaccttcaaaccattcttcattagaagtacaattgaa |
377793 |
T |
|
| Q |
212 |
tggcttaatataggaacatgaccatccactacttgaacacaatatttgctcaaaatagcaattgctatcattttaacttgaatgaaggacaagtcctttc |
311 |
Q |
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| T |
377792 |
tgacttaatataggaacatgaccatccactacttgaacacaatatttgctcaaaatagcaattgctatcattttaacttgaatgaaggacaagtcctttc |
377693 |
T |
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| Q |
312 |
ccaaacaagtccttggtccagcattaaaactaaagaacttataagacggttcatgaacaatgctacctctctcagatatccatctc |
397 |
Q |
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| T |
377692 |
ccaaacaagtccttggtccagcattaaaactaaagaacttataagacggttcatgaacaatgctacctctctcagatatccatctc |
377607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 147 - 397
Target Start/End: Original strand, 355304 - 355554
Alignment:
| Q |
147 |
tccatcaaattcatctttttgttatcctaacctttaaaccattcttcataagaagtacaattgaatggcttaatataggaacatgaccatccactacttg |
246 |
Q |
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| T |
355304 |
tccatcaaatttctctttttgttatcctaaccttcaaaccattcttcataagaagtacaattgaatggcttaagataggaacatgaccatcaactacttg |
355403 |
T |
|
| Q |
247 |
aacacaatatttgctcaaaatagcaattgctatcattttaacttgaatgaaggacaagtcctttcccaaacaagtccttggtccagcattaaaactaaag |
346 |
Q |
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|||||||||||||||||||||||||||| | |||| |||| ||||||||||||||||||||||||||||||||| || |||||||||||| |||||| |
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| T |
355404 |
gacacaatatttgctcaaaatagcaattgttgtcatcttaatttgaatgaaggacaagtcctttcccaaacaagttctaggtccagcattataactaata |
355503 |
T |
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| Q |
347 |
aacttataagacggttcatgaacaatgctacctctctcagatatccatctc |
397 |
Q |
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| T |
355504 |
aacttgtaagatggtgtatgaacaatgcctcctctctcagatatccatctc |
355554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 162 - 397
Target Start/End: Original strand, 346660 - 346895
Alignment:
| Q |
162 |
tttttgttatcctaacctttaaaccattcttcataagaagtacaattgaatggcttaatataggaacatgaccatccactacttgaacacaatatttgct |
261 |
Q |
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||||||||||| ||||||| |||||||||||||||| || |||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||| |
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| T |
346660 |
tttttgttatcttaaccttcaaaccattcttcataacaattacaattgaatggcttaagataggaacatgaccatcaactacttggacacaatatttgct |
346759 |
T |
|
| Q |
262 |
caaaatagcaattgctatcattttaacttgaatgaaggacaagtcctttcccaaacaagtccttggtccagcattaaaactaaagaacttataagacggt |
361 |
Q |
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|||||||||||||| | |||| |||| ||||||||||||||||||||||||||||||||| || |||||||||||| |||||| ||||| ||||| ||| |
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| T |
346760 |
caaaatagcaattgttgtcatcttaatttgaatgaaggacaagtcctttcccaaacaagttctaggtccagcattataactaataaacttgtaagatggt |
346859 |
T |
|
| Q |
362 |
tcatgaacaatgctacctctctcagatatccatctc |
397 |
Q |
| |
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||||||||||| ||||||||||||||||||||| |
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| T |
346860 |
gtatgaacaatgcctcctctctcagatatccatctc |
346895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 284 - 393
Target Start/End: Complemental strand, 342004 - 341895
Alignment:
| Q |
284 |
ttaacttgaatgaaggacaagtcctttcccaaacaagtccttggtccagcattaaaactaaagaacttataagacggttcatgaacaatgctacctctct |
383 |
Q |
| |
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|||||||||||||| | ||| || |||||||||||||||| |||||||||||||||||||||||||| |||||||| ||| |||||||| ||||||| |
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| T |
342004 |
ttaacttgaatgaaagccaactctcttcccaaacaagtcctaggtccagcattaaaactaaagaacttgtaagacggcgcataaacaatgcctcctctct |
341905 |
T |
|
| Q |
384 |
cagatatcca |
393 |
Q |
| |
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|||| ||||| |
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| T |
341904 |
cagaaatcca |
341895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 278 - 393
Target Start/End: Complemental strand, 337972 - 337857
Alignment:
| Q |
278 |
atcattttaacttgaatgaaggacaagtcctttcccaaacaagtccttggtccagcattaaaactaaagaacttataagacggttcatgaacaatgctac |
377 |
Q |
| |
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||||| ||||||||||| || | ||| || |||||||||||||||||||||||||||||||||||||||| || ||||| ||| ||| |||||||| | |
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| T |
337972 |
atcatcttaacttgaatcaaagccaactctcttcccaaacaagtccttggtccagcattaaaactaaagaatttgtaagatggtgcataaacaatgcctc |
337873 |
T |
|
| Q |
378 |
ctctctcagatatcca |
393 |
Q |
| |
|
|||||||||| ||||| |
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|
| T |
337872 |
ctctctcagaaatcca |
337857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 147 - 287
Target Start/End: Complemental strand, 363371 - 363231
Alignment:
| Q |
147 |
tccatcaaattcatctttttgttatcctaacctttaaaccattcttcataagaagtacaattgaatggcttaatataggaacatgaccatccactacttg |
246 |
Q |
| |
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|||||||| || ||||||||| ||||||||||| |||||||| ||||| |||||||||||||||||| |||| ||||| | ||||| ||||| | | |
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| T |
363371 |
tccatcaattttctctttttgtgatcctaaccttcaaaccatttttcattagaagtacaattgaatggattaaagtaggagcttgaccttccaccgatag |
363272 |
T |
|
| Q |
247 |
aacacaatatttgctcaaaatagcaattgctatcattttaa |
287 |
Q |
| |
|
||| | | |||| |||||| ||||||||||||||||||| |
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| T |
363271 |
gacaggaaagttgcacaaaattgcaattgctatcattttaa |
363231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 357
Target Start/End: Original strand, 12164236 - 12164288
Alignment:
| Q |
305 |
tcctttcccaaacaagtccttggtccagcattaaaactaaagaacttataaga |
357 |
Q |
| |
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||||| ||||||||| |||||||||||||||||||| || |||||| ||||| |
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|
| T |
12164236 |
tccttacccaaacaactccttggtccagcattaaaagcaatgaacttgtaaga |
12164288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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