View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4825_low_5 (Length: 385)
Name: NF4825_low_5
Description: NF4825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4825_low_5 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 16 - 385
Target Start/End: Original strand, 3215510 - 3215879
Alignment:
| Q |
16 |
cctgtgaccaaaacaagaacaattgttacaaccacaaatccagttctaaagagataagataaataatcgcacacaaaaatacaaacaactgatcacgaaa |
115 |
Q |
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| T |
3215510 |
cctgtgaccaaaacaagaacaattgttacaaccacaaatccagttctaaagagataagataaataatcgcacatagaaacataaacaactgatcacgaaa |
3215609 |
T |
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| Q |
116 |
ttcagtcaattatgtctacatctctgaaacgagaatagagtgacttatgtagtttttcaattatacaaatcttattaaagttacaaagtattccactaac |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3215610 |
ttcagtcaattatgtctacatctctgaaacgagaatagagtgacttatgtaatttttcaattatacaaatcttattaaagttacaaagtattccactaac |
3215709 |
T |
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| Q |
216 |
ttcatttcgcaatcgagcgacttcgcagttatcagtgaatatgaatcatattcaacaaaaatatatacaatcttaggctctaagaaaaagattattaaag |
315 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3215710 |
ttcgtttcgcaatcgagcgacttcgcagttatcagtgaatatgaatcatattcaacaaaaatatatacaatcttaggctctaagaaaaagattattaaag |
3215809 |
T |
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| Q |
316 |
aaatgctttaaagcattacttaccctgtgcttaaaactgctggatggacattatactctcttgcaaaaac |
385 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3215810 |
aaatgctttaaagcattacttaccctgtgcttaaaactgctggatggacattatactctcttgcaaaaac |
3215879 |
T |
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