View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4825_low_8 (Length: 339)
Name: NF4825_low_8
Description: NF4825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4825_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 25 - 309
Target Start/End: Original strand, 43385946 - 43386230
Alignment:
| Q |
25 |
gaagggttctgctgtggccattcattggaatacaccaaagacactggggtgcagtatgaattgcaggggctttcgtgattgtgaacaccttcatagcttg |
124 |
Q |
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| T |
43385946 |
gaagggttctgctgtggccattcattggaatacaccaaagacactggggtgcagtatgaattgcaggggctttcgtgattgtgaacaccttcatagcttg |
43386045 |
T |
|
| Q |
125 |
ttaacacatagcttgaatcttccctatccctttccacccttttcttcacaccacatctttcacctgaacacttgtagtagttcctgcatgtatatgagca |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
43386046 |
ttaacacatagcttgaatcttccctatccctttccacccttttcttaacaccacatctttcacctgaacacttgtagtagttcctgcatgtatatcagca |
43386145 |
T |
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| Q |
225 |
catctttaattaacttaataatttaaagaagaagtatttgattaaatattttgttgtttctcaaaaccacctgataagatcaaca |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
43386146 |
catctttaattaacttaataatttaaagaagaagtatttgattaaatattttgttgtttctcaacaccacctgataagatcaaca |
43386230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 106 - 210
Target Start/End: Original strand, 38399322 - 38399426
Alignment:
| Q |
106 |
tgaacaccttcatagcttgttaacacatagcttgaatcttccctatccctttccacccttttcttcacaccacatctttcacctgaacacttgtagtagt |
205 |
Q |
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|||||||||||||| ||||||| ||||||||| ||||| || ||||||||||||||||||||||||||| ||||| ||| |||||| |||||||||| |
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| T |
38399322 |
tgaacaccttcataacttgttatcacatagctcgaatcatctctatccctttccacccttttcttcacattacatcccacacttgaacatttgtagtagt |
38399421 |
T |
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| Q |
206 |
tcctg |
210 |
Q |
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||||| |
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| T |
38399422 |
tcctg |
38399426 |
T |
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