View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4826-Insertion-3 (Length: 742)

Name: NF4826-Insertion-3
Description: NF4826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4826-Insertion-3
NF4826-Insertion-3
[»] chr1 (5 HSPs)
chr1 (8-605)||(26531416-26532013)
chr1 (646-689)||(26531314-26531357)
chr1 (394-500)||(43387052-43387158)
chr1 (400-469)||(17002177-17002246)
chr1 (400-469)||(34161005-34161074)
[»] chr8 (13 HSPs)
chr8 (320-545)||(10279009-10279234)
chr8 (443-537)||(19263274-19263368)
chr8 (353-495)||(42797243-42797385)
chr8 (393-500)||(10901395-10901502)
chr8 (396-495)||(23141753-23141852)
chr8 (394-495)||(13756564-13756665)
chr8 (400-469)||(16248550-16248619)
chr8 (400-469)||(34802287-34802356)
chr8 (444-540)||(36990356-36990451)
chr8 (447-510)||(15276763-15276826)
chr8 (447-510)||(15457132-15457195)
chr8 (391-464)||(10280401-10280474)
chr8 (400-469)||(16311763-16311832)
[»] scaffold0284 (2 HSPs)
scaffold0284 (319-554)||(70-303)
scaffold0284 (319-554)||(8885-9118)
[»] chr3 (10 HSPs)
chr3 (355-469)||(32970442-32970556)
chr3 (353-495)||(50331916-50332058)
chr3 (443-537)||(50425-50519)
chr3 (355-431)||(10022506-10022582)
chr3 (379-554)||(25225223-25225401)
chr3 (441-540)||(10020181-10020280)
chr3 (400-469)||(19816367-19816436)
chr3 (47-115)||(34024877-34024945)
chr3 (317-428)||(50244310-50244419)
chr3 (322-453)||(34849817-34849942)
[»] chr6 (6 HSPs)
chr6 (353-490)||(1599669-1599806)
chr6 (394-500)||(31737168-31737274)
chr6 (424-545)||(18089900-18090021)
chr6 (400-455)||(9450708-9450763)
chr6 (320-419)||(20874145-20874246)
chr6 (484-545)||(27100245-27100306)
[»] chr2 (8 HSPs)
chr2 (379-500)||(3395405-3395526)
chr2 (394-513)||(39403378-39403495)
chr2 (438-546)||(14908811-14908919)
chr2 (394-469)||(36727617-36727692)
chr2 (394-521)||(24967973-24968099)
chr2 (379-500)||(5788826-5788945)
chr2 (395-469)||(29975905-29975979)
chr2 (417-495)||(41754118-41754196)
[»] chr5 (5 HSPs)
chr5 (394-534)||(38015851-38015991)
chr5 (442-545)||(24539656-24539759)
chr5 (320-514)||(19318849-19319039)
chr5 (319-452)||(9025673-9025805)
chr5 (379-545)||(42953857-42954024)
[»] scaffold1743 (1 HSPs)
scaffold1743 (443-537)||(158-252)
[»] chr7 (3 HSPs)
chr7 (393-479)||(4704111-4704197)
chr7 (388-515)||(4714226-4714353)
chr7 (447-500)||(6189866-6189919)
[»] chr4 (8 HSPs)
chr4 (443-536)||(22681136-22681229)
chr4 (394-469)||(13228720-13228795)
chr4 (394-548)||(14285289-14285443)
chr4 (400-496)||(3773720-3773816)
chr4 (393-469)||(14265631-14265707)
chr4 (393-546)||(6555328-6555481)
chr4 (379-500)||(13910150-13910271)
chr4 (476-537)||(28474807-28474868)
[»] scaffold0211 (1 HSPs)
scaffold0211 (319-559)||(16277-16516)
[»] scaffold1315 (1 HSPs)
scaffold1315 (441-537)||(1327-1423)
[»] scaffold1293 (1 HSPs)
scaffold1293 (441-537)||(648-744)
[»] scaffold0024 (2 HSPs)
scaffold0024 (394-537)||(47075-47218)
scaffold0024 (460-546)||(46248-46334)
[»] scaffold1737 (1 HSPs)
scaffold1737 (320-419)||(476-577)
[»] scaffold0159 (1 HSPs)
scaffold0159 (379-500)||(33199-33318)


Alignment Details
Target: chr1 (Bit Score: 425; Significance: 0; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 8 - 605
Target Start/End: Complemental strand, 26532013 - 26531416
Alignment:
Q  8 ttagctcccccataaggtccaaagatggtatgatggtatcatagcctgattcgactttatggagaagcataagtggtttctggtgatatatcctggatgc 107  Q
    |||||| |||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  26532013 ttagcttccccataaggtccaaatatagtatgatggtatcatagcctaattcgactttatggagaagcataggtggtttctggtgatatatcctggatgc 26531914  T
Q  108 gaagggtcacatacttgagtgagagagttgttaatttgtcaaatgtgagtttgaagttctacatttgatgtaagagta----ttgataaacatgtaagtg 203  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||||||| |||||||||||||  |||||||||||    ||||||||||||||||||    
T  26531913 gaagggtcacatacttgagtgagaga--tgttaatttgtcaaatgtgagtt-gaagttctacattgaatgtaagagtaaatattgataaacatgtaagtg 26531817  T
Q  204 agagatgttatgttgtctattctcatgaaagaaatgtatgtaaacctttctccatgaaatcaccatcatcccaccnnnnnnnnnnnnnnnnn---accat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||                    |||||    
T  26531816 agagatgttatgttgtctattctcatgaaagaaatgtatgtaaacatttctccatgaaatcaccatcatcccaccttttttttttttttttttttaccat 26531717  T
Q  301 attgtgtctctaatggattttatttggctatgtcaccatattacatatatggagagagtctcacgtttaagagagaagtgttaatatgttagatgtgagt 400  Q
    ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26531716 attgtgtctctaatggactttatttggccatgtcaccatattacatatatggagagagtctcacgtttaagagagaagtgttaatatgttagatgtgagt 26531617  T
Q  401 taaagtttcacattagatgcaatagtagatgaccagaaaaatataagtgagatgactcatatatctaatatattaaggttgtgggtgaagatgtggtgtc 500  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  26531616 taaagtttcacattagatgcaatagtagatg--cagaaaaatataagtgagatgactcatatatctaatatattaaggttatgggtgaagatgtggtgtc 26531519  T
Q  501 gatatcacttttgtggtttctcttggcctaatgtgattatccaacttaatttagtctcctccaaaagctacaaacattatgatggaattgttttattata 600  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||    
T  26531518 gatatcacttttgtggtttctcttggcctaatttgattatccaacttaatttagtctcctccaaaagctac-aacattatgat-gaattgttttcttata 26531421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 646 - 689
Target Start/End: Complemental strand, 26531357 - 26531314
Alignment:
Q  646 cttctacctctattatttcaaatttcttaacttgtagtctttga 689  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  26531357 cttctacctctattatttcaaatttcttaacttgtagtctttga 26531314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 394 - 500
Target Start/End: Complemental strand, 43387158 - 43387052
Alignment:
Q  394 tgtgagttaaagtttcacattagatgcaatagtagatgaccagaaaaatataagtgagatgactcatatatctaatatattaaggttgtgggtgaagatg 493  Q
    ||||||||||| || ||||||  |||||||||||||||   ||||| |||||||||| ||||||| |||||||||| | ||||| || ||||||||| ||    
T  43387158 tgtgagttaaaattacacattgaatgcaatagtagatgttgagaaacatataagtgaaatgactcgtatatctaatgtcttaagattttgggtgaagttg 43387059  T
Q  494 tggtgtc 500  Q
    || ||||    
T  43387058 tgatgtc 43387052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 400 - 469
Target Start/End: Complemental strand, 17002246 - 17002177
Alignment:
Q  400 ttaaagtttcacattagatgcaatagtagatgaccagaaaaatataagtgagatgactcatatatctaat 469  Q
    |||||| |||||||| |||  || |||||||||  |||||||||||||||| ||||| |||||| |||||    
T  17002246 ttaaagcttcacattggataaaaaagtagatgatgagaaaaatataagtgaaatgacccatatacctaat 17002177  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 400 - 469
Target Start/End: Original strand, 34161005 - 34161074
Alignment:
Q  400 ttaaagtttcacattagatgcaatagtagatgaccagaaaaatataagtgagatgactcatatatctaat 469  Q
    ||||||||||||||| |||  ||  ||||||||  |||||||||||||||| ||||| |||||| |||||    
T  34161005 ttaaagtttcacattggataaaaaggtagatgatgagaaaaatataagtgaaatgacccatatacctaat 34161074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 2e-26; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 320 - 545
Target Start/End: Original strand, 10279009 - 10279234
Alignment:
Q  320 ttatttggctatgtcaccatattacatatatggagagagtctcacgtttaagagagaagtgttaatatgttagatgtgagttaaagtttcacattagatg 419  Q
    ||||||| | ||||||||| ||||||||| ||  |||||||||||  |||||||| |  ||||||||| | | ||||||||| ||||||||||||  ||     
T  10279009 ttatttgacaatgtcaccaaattacatatgtgcggagagtctcacacttaagagatagatgttaatatatcatatgtgagttgaagtttcacattcaatt 10279108  T
Q  420 caatagtagatgaccagaaaaatataagtgagatgactcatatatctaatatattaaggttgtgggtgaagatgtggtgtcgatatcacttttgtggttt 519  Q
    ||| ||||||||   |||||| ||||||||||||||  |||||| ||||| |  ||||||| ||||| ||||||||   || || ||||||||||||||     
T  10279109 caagagtagatggtgagaaaattataagtgagatgatccatatacctaatgttgtaaggttttgggttaagatgtgacatcaatctcacttttgtggttg 10279208  T
Q  520 ctcttggcctaatgtgattatccaac 545  Q
     || | || |||||||||||||||||    
T  10279209 ttcatagcttaatgtgattatccaac 10279234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 443 - 537
Target Start/End: Complemental strand, 19263368 - 19263274
Alignment:
Q  443 ataagtgagatgactcatatatctaatatattaaggttgtgggtgaagatgtggtgtcgatatcacttttgtggtttctcttggcctaatgtgat 537  Q
    |||||||| |||||||||||| ||||| | ||||||||  || || |||||||||||| || ||||||||||||| ||| || | ||||||||||    
T  19263368 ataagtgatatgactcatatacctaatgtcttaaggtttaggatggagatgtggtgtcaatctcacttttgtggtatctgttagtctaatgtgat 19263274  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 353 - 495
Target Start/End: Complemental strand, 42797385 - 42797243
Alignment:
Q  353 agagagtctcacgtttaagagagaagtgttaatatgttagatgtgagttaaagtttcacattagatgcaatagtagatgaccagaaaaatataagtgaga 452  Q
    ||||||||||| | |||| ||| |  ||||||| ||| |  ||||||||||| |  ||||||  ||||||||||| |||   ||||| ||||||||||||    
T  42797385 agagagtctcatgcttaatagaaagatgttaatgtgtcaagtgtgagttaaaataacacattgaatgcaatagtatatgttgagaaacatataagtgaga 42797286  T
Q  453 tgactcatatatctaatatattaaggttgtgggtgaagatgtg 495  Q
    |||||||| |||||||| | ||||| || ||||||||| ||||    
T  42797285 tgactcatgtatctaatgtcttaagattttgggtgaagttgtg 42797243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 393 - 500
Target Start/End: Complemental strand, 10901502 - 10901395
Alignment:
Q  393 atgtgagttaaagtttcacattagatgcaatagtagatgaccagaaaaatataagtgagatgactcatatatctaatatattaaggttgtgggtgaagat 492  Q
    |||||||||||| |  ||||||  |||||||||||||||   || || ||| |||||||||||||| |||||||||| | ||||| || ||||||||| |    
T  10901502 atgtgagttaaaataacacattgaatgcaatagtagatgttgagtaacatacaagtgagatgactcgtatatctaatgtgttaagattttgggtgaagtt 10901403  T
Q  493 gtggtgtc 500  Q
    ||| ||||    
T  10901402 gtgatgtc 10901395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 396 - 495
Target Start/End: Complemental strand, 23141852 - 23141753
Alignment:
Q  396 tgagttaaagtttcacattagatgcaatagtagatgaccagaaaaatataagtgagatgactcatatatctaatatattaaggttgtgggtgaagatgtg 495  Q
    ||||||||| |  ||||||  |||||||||||||||   ||||| |||||| ||||||||||||| |||||||| | ||||| || ||||||||| ||||    
T  23141852 tgagttaaaataacacattgaatgcaatagtagatgttgagaaacatataaatgagatgactcatgtatctaatgtcttaagattttgggtgaagttgtg 23141753  T

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Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 394 - 495
Target Start/End: Original strand, 13756564 - 13756665
Alignment:
Q  394 tgtgagttaaagtttcacattagatgcaatagtagatgaccagaaaaatataagtgagatgactcatatatctaatatattaaggttgtgggtgaagatg 493  Q
    ||||||||||| |  ||||||  |||||||||||||||   ||||| || ||||||| ||||||||| |||||||| | ||||| || ||||||||| ||    
T  13756564 tgtgagttaaaataacacattgaatgcaatagtagatgttgagaaacatttaagtgaaatgactcatgtatctaatgtcttaagattttgggtgaagttg 13756663  T
Q  494 tg 495  Q
    ||    
T  13756664 tg 13756665  T

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Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 400 - 469
Target Start/End: Complemental strand, 16248619 - 16248550
Alignment:
Q  400 ttaaagtttcacattagatgcaatagtagatgaccagaaaaatataagtgagatgactcatatatctaat 469  Q
    |||||| ||||||||||||  || |||||||||  |||||||||||||||| ||||| |||||| |||||    
T  16248619 ttaaagcttcacattagataaaaaagtagatgatgagaaaaatataagtgaaatgacccatatacctaat 16248550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 400 - 469
Target Start/End: Original strand, 34802287 - 34802356
Alignment:
Q  400 ttaaagtttcacattagatgcaatagtagatgaccagaaaaatataagtgagatgactcatatatctaat 469  Q
    |||||| ||||||||||||  || |||||||||  |||||||||||||||| ||||| |||||| |||||    
T  34802287 ttaaagcttcacattagataaaaaagtagatgatgagaaaaatataagtgaaatgacccatatacctaat 34802356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 444 - 540
Target Start/End: Original strand, 36990356 - 36990451
Alignment:
Q  444 taagtgagatgactcatatatctaatatattaaggttgtgggtgaagatgtggtgtcgatatcacttttgtggtttctcttggcctaatgtgattat 540  Q
    |||||||||||||  |||||| |||| | |||||||| || ||||| |||||||||| |||||| |||  ||||||||||| | | |||||||||||    
T  36990356 taagtgagatgaccaatatatgtaatgtcttaaggttttgagtgaatatgtggtgtcaatatca-tttgttggtttctcttagtcaaatgtgattat 36990451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 447 - 510
Target Start/End: Complemental strand, 15276826 - 15276763
Alignment:
Q  447 gtgagatgactcatatatctaatatattaaggttgtgggtgaagatgtggtgtcgatatcactt 510  Q
    ||||||||||| |||||  |||| |||||||||| | ||||||||||||||||| || ||||||    
T  15276826 gtgagatgactaatatacataatgtattaaggttttaggtgaagatgtggtgtcaatctcactt 15276763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 447 - 510
Target Start/End: Complemental strand, 15457195 - 15457132
Alignment:
Q  447 gtgagatgactcatatatctaatatattaaggttgtgggtgaagatgtggtgtcgatatcactt 510  Q
    ||||||||||| |||||  |||| |||||||||| | ||||||||||||||||| || ||||||    
T  15457195 gtgagatgactaatatacataatgtattaaggttttaggtgaagatgtggtgtcaatctcactt 15457132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 391 - 464
Target Start/End: Original strand, 10280401 - 10280474
Alignment:
Q  391 agatgtgagttaaagtttcacattagatgcaatagtagatgaccagaaaaatataagtgagatgactcatatat 464  Q
    |||| |||||| ||||||||||||| ||||||  ||||||    ||||| |||||||||| |||||||||||||    
T  10280401 agatatgagttgaagtttcacattacatgcaagggtagattgtgagaaacatataagtgaaatgactcatatat 10280474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 400 - 469
Target Start/End: Complemental strand, 16311832 - 16311763
Alignment:
Q  400 ttaaagtttcacattagatgcaatagtagatgaccagaaaaatataagtgagatgactcatatatctaat 469  Q
    |||||| |||||||| |||  || |||||||||  |||||||||||||||| ||||| |||||| |||||    
T  16311832 ttaaagcttcacattggataaaaaagtagatgatgagaaaaatataagtgaaatgacccatatacctaat 16311763  T

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Target: scaffold0284 (Bit Score: 53; Significance: 5e-21; HSPs: 2)
Name: scaffold0284
Description:

Target: scaffold0284; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 319 - 554
Target Start/End: Complemental strand, 303 - 70
Alignment:
Q  319 tttatttggctatgtcaccatattacatatatggagagagtctcacgtttaagagagaagtgttaatatgttagatgtgagttaaagtttcacattagat 418  Q
    ||||||||| |||||||||| |||||| || |  ||| |||||||| |||| ||||||   |||||| |||   |||||||||||||||||| ||| |||    
T  303 tttatttggttatgtcaccaaattacagatgt--agaaagtctcacatttaggagagagaagttaatttgtcgtatgtgagttaaagtttcatattggat 206  T
Q  419 gcaatagtagatgaccagaaaaatataagtgagatgactcatatatctaatatattaaggttgtgggtgaagatgtggtgtcgatatcacttttgtggtt 518  Q
    |||| ||||| ||  || |||||||||||||||||||| |||||| |||||   ||||  || ||| ||| ||||||||||  || |||||||| ||| |    
T  205 gcaagagtaggtggtcaaaaaaatataagtgagatgacacatataactaatgccttaaatttttggatgatgatgtggtgttaatttcacttttatgggt 106  T
Q  519 tctcttggcctaatgtgattatccaacttaatttag 554  Q
     || ||  || ||||| ||||||||||||| |||||    
T  105 gcttttacccaaatgtaattatccaacttagtttag 70  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0284; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 319 - 554
Target Start/End: Complemental strand, 9118 - 8885
Alignment:
Q  319 tttatttggctatgtcaccatattacatatatggagagagtctcacgtttaagagagaagtgttaatatgttagatgtgagttaaagtttcacattagat 418  Q
    ||||||||| |||||||||| |||||| || |  ||| |||||||| |||| ||||||   |||||| |||   |||||||||||||||||| ||| |||    
T  9118 tttatttggttatgtcaccaaattacagatgt--agaaagtctcacatttaggagagagaagttaatttgtcgtatgtgagttaaagtttcatattggat 9021  T
Q  419 gcaatagtagatgaccagaaaaatataagtgagatgactcatatatctaatatattaaggttgtgggtgaagatgtggtgtcgatatcacttttgtggtt 518  Q
    |||| ||||| ||  || |||||||||||||||||||| |||||| |||||   ||||  || ||| ||| ||||||||||  || |||||||| ||| |    
T  9020 gcaagagtaggtggtcaaaaaaatataagtgagatgacacatataactaatgccttaaatttttggatgatgatgtggtgttaatttcacttttatgggt 8921  T
Q  519 tctcttggcctaatgtgattatccaacttaatttag 554  Q
     || ||  || ||||| ||||||||||||| |||||    
T  8920 gcttttacccaaatgtaattatccaacttagtttag 8885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 8e-20; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 355 - 469
Target Start/End: Complemental strand, 32970556 - 32970442
Alignment:
Q  355 agagtctcacgtttaagagagaagtgttaatatgttagatgtgagttaaagtttcacattagatgcaatagtagatgaccagaaaaatataagtgagatg 454  Q
    |||||||||| ||| || ||||  ||||||||||| | |||||||| ||||||||||||||||||||| ||||||||   | ||| ||||||||||||||    
T  32970556 agagtctcacatttcagggagatatgttaatatgtcaaatgtgagtgaaagtttcacattagatgcaagagtagatgctgaaaaatatataagtgagatg 32970457  T
Q  455 actcatatatctaat 469  Q
    || |||||| |||||    
T  32970456 acccatatacctaat 32970442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 353 - 495
Target Start/End: Complemental strand, 50332058 - 50331916
Alignment:
Q  353 agagagtctcacgtttaagagagaagtgttaatatgttagatgtgagttaaagtttcacattagatgcaatagtagatgaccagaaaaatataagtgaga 452  Q
    ||||||| ||| | |||| |||||  ||||||| ||| |  ||||||||||| |  ||||||  |||||||||||||||   ||||| ||||||||||||    
T  50332058 agagagtttcatgcttaatagagagatgttaatgtgtcaagtgtgagttaaaataacacattgaatgcaatagtagatgttgagaaacatataagtgaga 50331959  T
Q  453 tgactcatatatctaatatattaaggttgtgggtgaagatgtg 495  Q
    |||||||| |||||||| | ||||| || ||||||||| ||||    
T  50331958 tgactcatgtatctaatgtcttaagattttgggtgaagttgtg 50331916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 443 - 537
Target Start/End: Original strand, 50425 - 50519
Alignment:
Q  443 ataagtgagatgactcatatatctaatatattaaggttgtgggtgaagatgtggtgtcgatatcacttttgtggtttctcttggcctaatgtgat 537  Q
    |||||||| |||||||||||| ||||| | ||||||||  || || |||||||||||| || ||||||||||||| ||| || | ||||||||||    
T  50425 ataagtgatatgactcatatacctaatgtcttaaggtttgggatggagatgtggtgtcaatctcacttttgtggtatctgttagtctaatgtgat 50519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 355 - 431
Target Start/End: Original strand, 10022506 - 10022582
Alignment:
Q  355 agagtctcacgtttaagagagaagtgttaatatgttagatgtgagttaaagtttcacattagatgcaatagtagatg 431  Q
    |||||||||| ||| || ||||  ||||||||||| | |||||| | ||||||||||||||||||||| ||||||||    
T  10022506 agagtctcacatttcagggagatatgttaatatgtcaaatgtgactgaaagtttcacattagatgcaagagtagatg 10022582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 379 - 554
Target Start/End: Complemental strand, 25225401 - 25225223
Alignment:
Q  379 tgttaatatgttagatgtgagttaaagtttcacattagatgcaatagtagatgaccagaaaaatataagtgagatgactcatatatctaat---atatta 475  Q
    ||||||||||| |  |||||||||||||| ||||||  |||||||||||||||   | ||| ||| ||||| |||||| |||||| |||||    || ||    
T  25225401 tgttaatatgtcatttgtgagttaaagttccacattgaatgcaatagtagatggtgaaaaagatacaagtgtgatgacccatatacctaatgtcttaata 25225302  T
Q  476 aggttgtgggtgaagatgtggtgtcgatatcacttttgtggtttctcttggcctaatgtgattatccaacttaatttag 554  Q
    | | | ||  |||||||||| |||| || ||||||||  | || ||||||| |||||||||||||| ||| ||||||||    
T  25225301 aagatatgaatgaagatgtgatgtcaatctcacttttacgattgctcttggtctaatgtgattatcgaacctaatttag 25225223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 441 - 540
Target Start/End: Original strand, 10020181 - 10020280
Alignment:
Q  441 atataagtgagatgactcatatatctaatatattaaggttgtgggtgaagatgtggtgtcgatatcacttttgtggtttctcttggcctaatgtgattat 540  Q
    |||||||||||||||||||||||  |||||| ||||| || |||||| | || | || || || |||||| |||||||||||||||  ||||||| ||||    
T  10020181 atataagtgagatgactcatatacttaatatcttaagattttgggtggacatttagtatcaatctcacttgtgtggtttctcttggtttaatgtggttat 10020280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 400 - 469
Target Start/End: Complemental strand, 19816436 - 19816367
Alignment:
Q  400 ttaaagtttcacattagatgcaatagtagatgaccagaaaaatataagtgagatgactcatatatctaat 469  Q
    |||||| ||||||||||||  || |||||||||  |||||||||||||||| ||||| |||||| |||||    
T  19816436 ttaaagcttcacattagataaaaaagtagatgatgagaaaaatataagtgaaatgacccatatacctaat 19816367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 47 - 115
Target Start/End: Original strand, 34024877 - 34024945
Alignment:
Q  47 catagcctgattcgactttatggagaagcataagtggtttctggtgatatatcctggatgcgaagggtc 115  Q
    ||||| |||||||||||||||| ||||||| |||| |||| ||||| || ||||| |||||| ||||||    
T  34024877 catagtctgattcgactttatgtagaagcagaagtagtttttggtggtagatcctagatgcgtagggtc 34024945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 317 - 428
Target Start/End: Original strand, 50244310 - 50244419
Alignment:
Q  317 attttatttggctatgtcaccatattacatatatggagagagtctcacgtttaagagagaagtgttaatatgttagatgtgagttaaagtttcacattag 416  Q
    ||||||||||| |||||||||| |||||| || |  ||| |||||||| |||| ||||||   |||||| |||   |||||||||||||||||| ||| |    
T  50244310 attttatttggttatgtcaccaaattacagatgt--agaaagtctcacatttaggagagagaagttaatttgtcgtatgtgagttaaagtttcatattgg 50244407  T
Q  417 atgcaatagtag 428  Q
    |||||| |||||    
T  50244408 atgcaagagtag 50244419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 322 - 453
Target Start/End: Complemental strand, 34849942 - 34849817
Alignment:
Q  322 atttggctatgtcaccatattacatatatggagagagtctcacgtttaagagagaagtgttaatatgttagatgtgagttaaagtttcacattagatgca 421  Q
    |||||| ||||||||||||||||| ||  | | | |||||||| |||||||||    ||||||| ||| | |||||| |||||||||||||||  || ||    
T  34849942 atttggatatgtcaccatattacacat--gcaaaaagtctcacatttaagaga----tgttaatgtgtcatatgtgaattaaagtttcacattgaattca 34849849  T
Q  422 atagtagatgaccagaaaaatataagtgagat 453  Q
    || |||||||   || ||||||||||||||||    
T  34849848 atggtagatggtgaggaaaatataagtgagat 34849817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 7e-17; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 353 - 490
Target Start/End: Original strand, 1599669 - 1599806
Alignment:
Q  353 agagagtctcacgtttaagagagaagtgttaatatgttagatgtgagttaaagtttcacattagatgcaatagtagatgaccagaaaaatataagtgaga 452  Q
    ||||||||||| | |||| |||||  ||||||| ||| |  ||||||||||| |  ||||||  |||||||||||||||   ||||| ||||||||||||    
T  1599669 agagagtctcatgcttaatagagagatgttaatgtgtcaagtgtgagttaaaataacacattgaatgcaatagtagatgttgagaaacatataagtgaga 1599768  T
Q  453 tgactcatatatctaatatattaaggttgtgggtgaag 490  Q
    |||||||| |||||||| | ||||| || |||||||||    
T  1599769 tgactcatgtatctaatgtcttaagattttgggtgaag 1599806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 394 - 500
Target Start/End: Complemental strand, 31737274 - 31737168
Alignment:
Q  394 tgtgagttaaagtttcacattagatgcaatagtagatgaccagaaaaatataagtgagatgactcatatatctaatatattaaggttgtgggtgaagatg 493  Q
    ||||||||||| ||||||||| ||||||| ||||||||   |  || ||| |||||| |||| ||||||| |||||| |||||| ||  | |||||||||    
T  31737274 tgtgagttaaaatttcacattggatgcaagagtagatgttgaacaacatacaagtgatatgattcatatacctaatacattaagatttagtgtgaagatg 31737175  T
Q  494 tggtgtc 500  Q
    |||||||    
T  31737174 tggtgtc 31737168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 424 - 545
Target Start/End: Complemental strand, 18090021 - 18089900
Alignment:
Q  424 agtagatgaccagaaaaatataagtgagatgactcatatatctaatatattaaggttgtgggtgaagatgtggtgtcgatatcacttttgtggtttctct 523  Q
    ||||||||  |||||| |||||| ||||||||   ||||| |||||   |||||||| ||||||||||||||||||| || |||| | ||| ||| ||||    
T  18090021 agtagatgttcagaaacatataattgagatgaacaatatacctaatgccttaaggttttgggtgaagatgtggtgtcaatctcacctctgtagttgctct 18089922  T
Q  524 tggcctaatgtgattatccaac 545  Q
    | | ||||| |||| |||||||    
T  18089921 tagtctaatatgatgatccaac 18089900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 400 - 455
Target Start/End: Complemental strand, 9450763 - 9450708
Alignment:
Q  400 ttaaagtttcacattagatgcaatagtagatgaccagaaaaatataagtgagatga 455  Q
    ||||||||||||||| |||| || |||||||||  |||||||||||||||| ||||    
T  9450763 ttaaagtttcacattggatgaaagagtagatgatgagaaaaatataagtgaaatga 9450708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 320 - 419
Target Start/End: Original strand, 20874145 - 20874246
Alignment:
Q  320 ttatttggctatgtcaccatattacatat--atggagagagtctcacgtttaagagagaagtgttaatatgttagatgtgagttaaagtttcacattaga 417  Q
    ||||||||||||||| |  ||||||| ||  ||| ||||||| ||||| ||||| ||||  ||||||| ||| | ||||||||||||| || ||||||||    
T  20874145 ttatttggctatgtctctttattacacatgcatgcagagagtttcacgcttaagggagagatgttaatgtgtcaaatgtgagttaaagatttacattaga 20874244  T
Q  418 tg 419  Q
    ||    
T  20874245 tg 20874246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 484 - 545
Target Start/End: Original strand, 27100245 - 27100306
Alignment:
Q  484 ggtgaagatgtggtgtcgatatcacttttgtggtttctcttggcctaatgtgattatccaac 545  Q
    |||||||||||| |||| || ||| |||||| ||||||||| | ||| ||||||||||||||    
T  27100245 ggtgaagatgtgatgtctatttcatttttgtagtttctcttagactagtgtgattatccaac 27100306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 7e-17; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 379 - 500
Target Start/End: Complemental strand, 3395526 - 3395405
Alignment:
Q  379 tgttaatatgttagatgtgagttaaagtttcacattagatgcaatagtagatgaccagaaaaatataagtgagatgactcatatatctaatatattaagg 478  Q
    ||||||| ||| || ||||||||||| |  ||| ||  |||||||||||||||   ||||| ||||||||||||||||||||||||||||| | |||||     
T  3395526 tgttaatgtgtcaggtgtgagttaaaataacactttgaatgcaatagtagatgttgagaaacatataagtgagatgactcatatatctaatgtcttaaga 3395427  T
Q  479 ttgtgggtgaagatgtggtgtc 500  Q
    || ||||||||| |||| ||||    
T  3395426 ttttgggtgaagttgtgatgtc 3395405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 394 - 513
Target Start/End: Complemental strand, 39403495 - 39403378
Alignment:
Q  394 tgtgagttaaagtttcacattagatgcaatagtagatgaccagaaaaatataagtgagatgactcatatatctaatatattaaggttgtgggtgaagatg 493  Q
    ||||||||||||||||| ||| ||||||| |||||||||  ||||||||||  |||||||||| || | | |||||  ||||| ||| ||| |||| |||    
T  39403495 tgtgagttaaagtttcagattggatgcaagagtagatgatgagaaaaatat--gtgagatgacccaaacacctaatgcattaatgttttggatgaacatg 39403398  T
Q  494 tggtgtcgatatcacttttg 513  Q
    ||||||| || |||||||||    
T  39403397 tggtgtcaatctcacttttg 39403378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 438 - 546
Target Start/End: Original strand, 14908811 - 14908919
Alignment:
Q  438 aaaatataagtgagatgactcatatatctaatatattaaggttgtgggtgaagatgtggtgtcgatatcacttttgtggtttctcttggcctaatgtgat 537  Q
    ||||||||||||||||| | || |||||||||   |||||| | | |||||||||| |||||| || |||  |||||||||  |||| || |||||||||    
T  14908811 aaaatataagtgagatgtcccacatatctaatgctttaaggatttaggtgaagatgaggtgtcaatctcatatttgtggttgatcttagcttaatgtgat 14908910  T
Q  538 tatccaact 546  Q
    |||||||||    
T  14908911 tatccaact 14908919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 394 - 469
Target Start/End: Complemental strand, 36727692 - 36727617
Alignment:
Q  394 tgtgagttaaagtttcacattagatgcaatagtagatgaccagaaaaatataagtgagatgactcatatatctaat 469  Q
    ||||| ||||| ||||||||||||||||| ||||||||   ||||| ||||| ||||||||||| ||||| |||||    
T  36727692 tgtgacttaaaatttcacattagatgcaaaagtagatgttaagaaacatatatgtgagatgactaatatagctaat 36727617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 394 - 521
Target Start/End: Original strand, 24967973 - 24968099
Alignment:
Q  394 tgtgagttaaagtttcacattagatgcaatagtagatgaccagaaaaatataagtgagatgactcatatatctaatatattaaggttgtgggtgaagatg 493  Q
    ||||| |||||||| |||||| ||||||||| ||||||   |  || |||||||||| || || ||||||| ||||   ||||||||  |||||||||||    
T  24967973 tgtgatttaaagttccacattggatgcaataatagatgttgaacaacatataagtgatataacccatatat-taatgacttaaggtttagggtgaagatg 24968071  T
Q  494 tggtgtcgatatcacttttgtggtttct 521  Q
    ||||||| |  |||||| ||||||||||    
T  24968072 tggtgtcaaactcacttgtgtggtttct 24968099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 379 - 500
Target Start/End: Complemental strand, 5788945 - 5788826
Alignment:
Q  379 tgttaatatgttagatgtgagttaaagtttcacattagatgcaatagtagatgaccagaaaaatataagtgagatgactcatatatctaatatattaagg 478  Q
    ||||||| ||| | |||||||||||| |  ||||||  |||||||||||||||   |  || ||||||||||||||||||  ||||||||| | |||||     
T  5788945 tgttaatgtgtcaaatgtgagttaaaataacacattgaatgcaatagtagatgttgaacaacatataagtgagatgactc--atatctaatgtcttaaga 5788848  T
Q  479 ttgtgggtgaagatgtggtgtc 500  Q
    || ||||||||| |||| ||||    
T  5788847 ttttgggtgaagttgtgatgtc 5788826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 395 - 469
Target Start/End: Complemental strand, 29975979 - 29975905
Alignment:
Q  395 gtgagttaaagtttcacattagatgcaatagtagatgaccagaaaaatataagtgagatgactcatatatctaat 469  Q
    ||||| |||||||  ||||||||||||||||||  ||   |||||||||||||  |||||||||||||| |||||    
T  29975979 gtgagataaagttctacattagatgcaatagtaagtggtgagaaaaatataagacagatgactcatatacctaat 29975905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 417 - 495
Target Start/End: Complemental strand, 41754196 - 41754118
Alignment:
Q  417 atgcaatagtagatgaccagaaaaatataagtgagatgactcatatatctaatatattaaggttgtgggtgaagatgtg 495  Q
    |||||||||||||||   ||||| |||||  ||| ||||||||| |||||||| ||||||| || ||||||||| ||||    
T  41754196 atgcaatagtagatgttgagaaacatatatatgatatgactcatgtatctaatgtattaagattttgggtgaagttgtg 41754118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 3e-16; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 394 - 534
Target Start/End: Complemental strand, 38015991 - 38015851
Alignment:
Q  394 tgtgagttaaagtttcacattagatgcaatagtagatgaccagaaaaatataagtgagatgactcatatatctaatatattaaggttgtgggtgaagatg 493  Q
    ||||||||||| |  ||||||  |||||||||||||||   || || |||||||||||||||||||||||||||||   ||||| || ||||||||| ||    
T  38015991 tgtgagttaaaataacacattgaatgcaatagtagatgttgagcaacatataagtgagatgactcatatatctaatgacttaagattttgggtgaagttg 38015892  T
Q  494 tggtgtcgatatcacttttgtggtttctcttggcctaatgt 534  Q
    || |||| || |||||| |||| || || || |||||||||    
T  38015891 tgatgtcaatctcacttgtgtgcttgcttttagcctaatgt 38015851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 442 - 545
Target Start/End: Original strand, 24539656 - 24539759
Alignment:
Q  442 tataagtgagatgactcatatatctaatatattaaggttgtgggtgaagatgtggtgtcgatatcacttttgtggtttctcttggcctaatgtgattatc 541  Q
    ||||||| |||||||||||||| ||||||  |||||  | |||||||||||||| |||| || |||||| |||||||  |||| ||||||| |||||||     
T  24539656 tataagtaagatgactcatatacctaatactttaagactttgggtgaagatgtgttgtcaatctcacttgtgtggttgatcttagcctaatatgattata 24539755  T
Q  542 caac 545  Q
    ||||    
T  24539756 caac 24539759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 320 - 514
Target Start/End: Complemental strand, 19319039 - 19318849
Alignment:
Q  320 ttatttggctatgtcaccatattacatatatggagagagtctcacgtttaagagagaagtgttaatatgttagatgtgagttaaagtttcacattagatg 419  Q
    ||||||| ||||||||||| |||||||||  | | ||||||||||  |||| |||||  ||||| | ||| | || ||||||||| || ||||||  |||    
T  19319039 ttatttgactatgtcaccaaattacatat--gcatagagtctcacacttaatagaga--tgttattgtgtcatatatgagttaaatttccacattgaatg 19318944  T
Q  420 caatagtagatgaccagaaaaatataagtgagatgactcatatatctaatatattaaggttgtgggtgaagatgtggtgtcgatatcacttttgt 514  Q
    ||  |||||||    ||| |||||||||||||||||| |||| | |||||   | |||||| ||| | |||| |||||||| |||||||||||||    
T  19318943 cacgagtagatagtgagataaatataagtgagatgacacatacacctaatgcttgaaggttttggataaagacgtggtgtcaatatcacttttgt 19318849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 319 - 452
Target Start/End: Original strand, 9025673 - 9025805
Alignment:
Q  319 tttatttggctatgtcaccatattacatatatggagagagtctcacgtttaagagagaagtgttaatatgttagatgtgagttaaagtttcacattagat 418  Q
    ||||||||| |||||||||| |||||| || |  ||| |||||||| |||| ||||||   |||||| |||   |||||||||||||||||| ||| |||    
T  9025673 tttatttggttatgtcaccaaattacagatgt--agaaagtctcacatttaggagagagaagttaatttgtcgtatgtgagttaaagtttcatattggat 9025770  T
Q  419 gcaatagtagatgaccagaa-aaatataagtgaga 452  Q
    |||| ||||| ||  || || ||||||||||||||    
T  9025771 gcaagagtaggtggtcaaaataaatataagtgaga 9025805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 379 - 545
Target Start/End: Complemental strand, 42954024 - 42953857
Alignment:
Q  379 tgttaatatgttagatgtgagttaaagtttcacattagatgcaatagtagatgaccagaaaaatataagtgagatgac-tcatatatctaatatattaag 477  Q
    ||||||||||| | |||||||||||||||||| ||||||||||  |||| |||   ||||| ||||| || | ||||| ||||||| |||||   ||||     
T  42954024 tgttaatatgtcatatgtgagttaaagtttcatattagatgcaggagtatatggtgagaaacatatacgtaaaatgacttcatatacctaatgctttaaa 42953925  T
Q  478 gttgtgggtgaagatgtggtgtcgatatcacttttgtggtttctcttggcctaatgtgattatccaac 545  Q
    | | ||| |||||| ||| |||| |  |||||| |||| ||  ||||  |||||||||||||||||||    
T  42953924 gatttggatgaagaagtgatgtcaaactcacttgtgtgattgatcttaacctaatgtgattatccaac 42953857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1743 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold1743
Description:

Target: scaffold1743; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 443 - 537
Target Start/End: Complemental strand, 252 - 158
Alignment:
Q  443 ataagtgagatgactcatatatctaatatattaaggttgtgggtgaagatgtggtgtcgatatcacttttgtggtttctcttggcctaatgtgat 537  Q
    |||||||| |||||||||||||||||| | ||||||||  || || |||||||||||| || ||||||||||||| ||| || | ||||||||||    
T  252 ataagtgatatgactcatatatctaatgtcttaaggtttaggatggagatgtggtgtcaatctcacttttgtggtatctgttagtctaatgtgat 158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 393 - 479
Target Start/End: Complemental strand, 4704197 - 4704111
Alignment:
Q  393 atgtgagttaaagtttcacattagatgcaatagtagatgaccagaaaaatataagtgagatgactcatatatctaatatattaaggt 479  Q
    |||||||||||||||||| |||| |||||| | |||||||  |||||||||| ||||||||||| |||| ||| | |||||||||||    
T  4704197 atgtgagttaaagtttcatattacatgcaagaatagatgatgagaaaaatattagtgagatgacccataaatcaactatattaaggt 4704111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 388 - 515
Target Start/End: Complemental strand, 4714353 - 4714226
Alignment:
Q  388 gttagatgtgagttaaagtttcacattagatgcaatagtagatgaccagaaaaatataagtgagatgactcatatatctaatatattaaggttgtgggtg 487  Q
    |||| |||||||||||| ||| | ||| ||||| | | |||||||  |||||||||| |||||||||| ||||| |||   |||||| ||||| | | ||    
T  4714353 gttatatgtgagttaaaattttatattggatgcgagaatagatgatgagaaaaatatgagtgagatgattcataaatcagctatattgaggtttttgatg 4714254  T
Q  488 aagatgtggtgtcgatatcacttttgtg 515  Q
    |||||||| |||  || |||||||||||    
T  4714253 aagatgtgatgtgaatctcacttttgtg 4714226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 447 - 500
Target Start/End: Original strand, 6189866 - 6189919
Alignment:
Q  447 gtgagatgactcatatatctaatatattaaggttgtgggtgaagatgtggtgtc 500  Q
    ||||||||||| |||||| |||| |||||||| | | |||||||||||||||||    
T  6189866 gtgagatgactaatatatataatgtattaaggctttaggtgaagatgtggtgtc 6189919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 443 - 536
Target Start/End: Complemental strand, 22681229 - 22681136
Alignment:
Q  443 ataagtgagatgactcatatatctaatatattaaggttgtgggtgaagatgtggtgtcgatatcacttttgtggtttctcttggcctaatgtga 536  Q
    |||||||| |||||||||||| ||||| | ||||||||  ||||| |||||||||||| || ||||||||||||| ||| || | |||||||||    
T  22681229 ataagtgatatgactcatatacctaatgtcttaaggtttagggtggagatgtggtgtcaatctcacttttgtggtatctgttagtctaatgtga 22681136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 394 - 469
Target Start/End: Original strand, 13228720 - 13228795
Alignment:
Q  394 tgtgagttaaagtttcacattagatgcaatagtagatgaccagaaaaatataagtgagatgactcatatatctaat 469  Q
    ||||||||||| |  ||||||  |||||||||||||||   ||||| |||||||||||||||||||||||||||||    
T  13228720 tgtgagttaaaataacacattgaatgcaatagtagatgttgagaaacatataagtgagatgactcatatatctaat 13228795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 394 - 548
Target Start/End: Original strand, 14285289 - 14285443
Alignment:
Q  394 tgtgagttaaagtttcacattagatgcaatagtagatgaccagaaaaatataagtgagatgactcatatatctaatatattaaggttgtgggtgaagatg 493  Q
    ||||||||||||||||| |||  |||||  |||||||||  ||||| |||||||||||||||   ||||||||||| | |||||| | |||  |||||||    
T  14285289 tgtgagttaaagtttcatattgaatgcatcagtagatgaagagaaacatataagtgagatgatcaatatatctaatgtcttaaggatttggacgaagatg 14285388  T
Q  494 tggtgtcgatatcacttttgtggtttctcttggcctaatgtgattatccaactta 548  Q
    | || || ||   | |  |||||||  ||||| |||||||||||||| |||||||    
T  14285389 tagtttcaatcagaataatgtggttgttcttgacctaatgtgattatacaactta 14285443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 400 - 496
Target Start/End: Original strand, 3773720 - 3773816
Alignment:
Q  400 ttaaagtttcacattagatgcaatagtagatgaccagaaaaatataagtgagatgactcatatatctaatatattaaggttgtgggtgaagatgtgg 496  Q
    |||||||| ||||||   ||||| ||||||||   | ||||||||| |||| |||||||||||||||||| | |||||||| | | |||||||||||    
T  3773720 ttaaagttccacattgactgcaagagtagatggtaacaaaaatataggtgaaatgactcatatatctaatgttttaaggttttagatgaagatgtgg 3773816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 393 - 469
Target Start/End: Complemental strand, 14265707 - 14265631
Alignment:
Q  393 atgtgagttaaagtttcacattagatgcaatagtagatgaccagaaaaatataagtgagatgactcatatatctaat 469  Q
    ||||||| |||||||  ||||| |||||||| |||||||   ||||||||||||| || || |||||||||||||||    
T  14265707 atgtgaggtaaagttctacattggatgcaattgtagatggtgagaaaaatataagagaaataactcatatatctaat 14265631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 393 - 546
Target Start/End: Original strand, 6555328 - 6555481
Alignment:
Q  393 atgtgagttaaagtttcacattagatgcaatagtagat-gaccagaaaaatataagtgagatgactcatatatctaatatattaaggttgtgggtgaaga 491  Q
    |||||||||||||||||| ||| ||||||| ||||| | | | | |||||||||||||||||||| || ||| ||||| | ||||  || ||| ||| ||    
T  6555328 atgtgagttaaagtttcatattggatgcaagagtaggtggtcaaaaaaaatataagtgagatgacacaaataactaatgtcttaaaatt-tggatgagga 6555426  T
Q  492 tgtggtgtcgatatcacttttgtggtttctcttggcctaatgtgattatccaact 546  Q
    ||||||||   | |||||||| ||| | || ||  || |||||||||||||||||    
T  6555427 tgtggtgttagtttcacttttatgggtgcttttacccaaatgtgattatccaact 6555481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 379 - 500
Target Start/End: Original strand, 13910150 - 13910271
Alignment:
Q  379 tgttaatatgttagatgtgagttaaagtttcacattagatgcaatagtagatgaccagaaaaatataagtgagatgactcatatatctaatatattaagg 478  Q
    ||||||| ||| | ||||||||||||||| || |||  |||||  |||||| ||  ||||| |||||| ||||||||  |||||||||||| | ||||||    
T  13910150 tgttaatgtgtcatatgtgagttaaagttccatattgaatgcatcagtagacgaagagaaacatataaatgagatgatccatatatctaatgtcttaagg 13910249  T
Q  479 ttgtgggtgaagatgtggtgtc 500  Q
     | |||  |||||||| |||||    
T  13910250 atttggacgaagatgtagtgtc 13910271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 476 - 537
Target Start/End: Complemental strand, 28474868 - 28474807
Alignment:
Q  476 aggttgtgggtgaagatgtggtgtcgatatcacttttgtggtttctcttggcctaatgtgat 537  Q
    ||||| || |||||||||||||||| || ||| ||||| |||||||||||| | ||||||||    
T  28474868 aggttttgagtgaagatgtggtgtcaatctcatttttggggtttctcttggtcaaatgtgat 28474807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0211 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 319 - 559
Target Start/End: Complemental strand, 16516 - 16277
Alignment:
Q  319 tttatttggctatgtcaccatattacatatatggagagagtctcacgtttaagagagaagtgttaatatgttagatgtgagttaaagtttcacattagat 418  Q
    ||||||||| |||||||||| |||||| || |  ||| |||||||| |||| ||||||   |||||| |||   |||||||||||||||||| ||| |||    
T  16516 tttatttggttatgtcaccaaattacagatgt--agaaagtctcacatttaggagagagaagttaatttgtcgtatgtgagttaaagtttcatattggat 16419  T
Q  419 gcaatagtagat-gaccagaaaaatataagtgagatgactcatatatctaatatattaaggttgtgggtgaagatgtggtgtcgatatcacttttgtggt 517  Q
    |||| ||||| | | | | |||||||||||||||||||| || ||| |||||   ||||  || ||| ||| ||||||||||   | |||||||| |||     
T  16418 gcaagagtaggtggtcaaaaaaaatataagtgagatgacacaaataactaatgccttaaaattttggatgaggatgtggtgttagtttcacttttatggg 16319  T
Q  518 ttctcttggcctaatgtgattatccaacttaatttagtctcc 559  Q
    | || ||  || ||||||||||||||||| | ||||| ||||    
T  16318 tgcttttacccaaatgtgattatccaactcagtttaggctcc 16277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1315 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold1315
Description:

Target: scaffold1315; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 441 - 537
Target Start/End: Original strand, 1327 - 1423
Alignment:
Q  441 atataagtgagatgactcatatatctaatatattaaggttgtgggtgaagatgtggtgtcgatatcacttttgtggtttctcttggcctaatgtgat 537  Q
    |||||||| | |||||  ||||||||||  | |||||||| ||| ||||||||||||||| || |||||| || |||||||||| ||| ||||||||    
T  1327 atataagttaaatgacaaatatatctaaagtcttaaggttttggatgaagatgtggtgtcaatctcacttatggggtttctcttagccaaatgtgat 1423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1293 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold1293
Description:

Target: scaffold1293; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 441 - 537
Target Start/End: Complemental strand, 744 - 648
Alignment:
Q  441 atataagtgagatgactcatatatctaatatattaaggttgtgggtgaagatgtggtgtcgatatcacttttgtggtttctcttggcctaatgtgat 537  Q
    |||||||| | |||||  ||||||||||  | |||||||| ||| ||||||||||||||| || |||||| || |||||||||| ||| ||||||||    
T  744 atataagttaaatgacaaatatatctaaagtcttaaggttttggatgaagatgtggtgtcaatctcacttatggggtttctcttagccaaatgtgat 648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 394 - 537
Target Start/End: Complemental strand, 47218 - 47075
Alignment:
Q  394 tgtgagttaaagtttcacattagatgcaatagtagatgaccagaaaaatataagtgagatgactcatatatctaatatattaaggttgtgggtgaagatg 493  Q
    |||||||||||||||||| ||  ||| |||||||||||   |  || |||||||||||||||| || ||| || || | |||||  | ||||||||||||    
T  47218 tgtgagttaaagtttcacgttgtatggaatagtagatgttgaacaacatataagtgagatgacacacatacctcatgtcttaagactttgggtgaagatg 47119  T
Q  494 tggtgtcgatatcacttttgtggtttctcttggcctaatgtgat 537  Q
    ||||||| ||  | | | ||||||| ||||| | ||||||||||    
T  47118 tggtgtcaatcgcgcatgtgtggttgctcttaggctaatgtgat 47075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 460 - 546
Target Start/End: Complemental strand, 46334 - 46248
Alignment:
Q  460 tatatctaatatattaaggttgtgggtgaagatgtggtgtcgatatcacttttgtggtttctcttggcctaatgtgattatccaact 546  Q
    |||||||||| |||||||||| | | ||| || |||||||| ||||||||| ||   |||||||| | | |||||||||||||||||    
T  46334 tatatctaatgtattaaggttttagatgatgaggtggtgtcaatatcacttatggcatttctcttagtcaaatgtgattatccaact 46248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1737 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold1737
Description:

Target: scaffold1737; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 320 - 419
Target Start/End: Original strand, 476 - 577
Alignment:
Q  320 ttatttggctatgtcaccatattacatat--atggagagagtctcacgtttaagagagaagtgttaatatgttagatgtgagttaaagtttcacattaga 417  Q
    ||||||||||||||| |  ||||||| ||  ||| ||||||| ||||| ||||| ||||  ||||||| ||| | ||||||||||||| || ||||||||    
T  476 ttatttggctatgtctctttattacacatgcatgcagagagtttcacgcttaagggagagatgttaatgtgtcaaatgtgagttaaagatttacattaga 575  T
Q  418 tg 419  Q
    ||    
T  576 tg 577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0159 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 379 - 500
Target Start/End: Complemental strand, 33318 - 33199
Alignment:
Q  379 tgttaatatgttagatgtgagttaaagtttcacattagatgcaatagtagatgaccagaaaaatataagtgagatgactcatatatctaatatattaagg 478  Q
    ||||||| ||| | |||||||||||| |  ||||||  |||||||||||||||   |  || ||||||||||||||||||  ||||||||| | |||||     
T  33318 tgttaatgtgtcaaatgtgagttaaaataacacattgaatgcaatagtagatgttgaacaacatataagtgagatgactc--atatctaatgtcttaaga 33221  T
Q  479 ttgtgggtgaagatgtggtgtc 500  Q
    || ||||||||| |||| ||||    
T  33220 ttttgggtgaagttgtgatgtc 33199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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