View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4826-Insertion-4 (Length: 741)

Name: NF4826-Insertion-4
Description: NF4826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4826-Insertion-4
NF4826-Insertion-4
[»] chr1 (1 HSPs)
chr1 (8-741)||(45711147-45711888)


Alignment Details
Target: chr1 (Bit Score: 542; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 542; E-Value: 0
Query Start/End: Original strand, 8 - 741
Target Start/End: Original strand, 45711147 - 45711888
Alignment:
Q  8 aatcctacattctcaattgactattaaccagaaaacaagaaaaacaacttttatatccctaagcctacgttctcacttaccacccgtatataggttatac 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45711147 aatcctacattctcaattgactattaaccagaaaacaagaaaaacaacttttatatccctaagcctacgttctcacttaccacccgtatataggttatac 45711246  T
Q  108 taagaaactcaaatatgaagc---atgaccaccctaaccaccccatcgttggtcaacctatctaacctc---tagggcacgtctgattatagtaaacttt 201  Q
    |||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||    
T  45711247 taagaaactcaaatatgaagcatgatgaccaccctaaccaccccatcgttggtcaacctatctaacctctagtagggcacgtctgattatagtaaacttt 45711346  T
Q  202 aggagaagannnnnnnataagttttaggtaattgagtctttttgttatatgaagttcgtgagcctaaaacaatgatttttgtctcactttgagccagtac 301  Q
    |||||||||       ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45711347 aggagaagatttttttataagttttaggtaattgagtatttttgttatatgaagttcgtgagcctaaaacaatgatttttgtctcactttgagccagtac 45711446  T
Q  302 acacacaaatataatggtttggcttattgacgtttaaccnnnnnnnctaatccaaatagtttagtaaatatgactgatatataaagtatataatacatgc 401  Q
    |||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  45711447 acacacaaatataatggtttggcttattgacgtttaaccaaaaaaactaatccaaatagtttagtaaatatgactgatatataaagtatataatacatcc 45711546  T
Q  402 aaacttttctatgttgtcagaaataaatataattgtgagtc-ttgtaaatacaattcagatagtagttgaagagatgttaatacacaagaacttgaattt 500  Q
    ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  45711547 aaacttttctatgttgtcaaaaataaatataattgtgagtctttgtaaatacaattcagatagtagttgaagagatgttaatacacaagagcttgaattt 45711646  T
Q  501 gtattcagcattctttatttttctatatttaaaatgtgcgagtctaaccactaaacaacctaatattnnnnnnnnnnnnncatacaaaattgtgatttgc 600  Q
    |||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||             ||||||||||||||||||||    
T  45711647 gtattcagcattttttatttctctatatttaaaatgtgcgagtctaaccactaaacaacctaatattaaaaataaaaaaacatacaaaattgtgatttgc 45711746  T
Q  601 acaaatgatttagcctttcattagatgtgccttctcaagcctaagtgtttttgtacccnnnnnnnnnnggaataataactcataagttttgaa-nnnnnn 699  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||           
T  45711747 acaaatgatttagcctttcattagatgtgccttctcaagcctaagtgtttttgtacccaaaaaaaaaaggaataataactcataagttttgaattttttt 45711846  T
Q  700 natttgtaaacaaagtgaaaattttgcagataactatgaaag 741  Q
     |||||||||||||||||||||||||||||||||||||||||    
T  45711847 tatttgtaaacaaagtgaaaattttgcagataactatgaaag 45711888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University