View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4826-Insertion-7 (Length: 416)
Name: NF4826-Insertion-7
Description: NF4826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4826-Insertion-7 |
 | |
|
| [»] chr4 (3 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 385; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 8 - 416
Target Start/End: Original strand, 54905158 - 54905566
Alignment:
| Q |
8 |
attttcagatgaggtgtcttgaccatataccccatcactaatgataccttgattttgatccttgctttcaatcttctttctaactacatgttgccatatg |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54905158 |
attttcagatgaggtgtcttgaccatataccccatcactaatgataccttgattttgatccttgctttcaatcttctttctaactacatgttgccatatg |
54905257 |
T |
|
| Q |
108 |
ctcttaagctcttccattcggatcggtttcactagatagttgcaagcaccgtgtataacactcttcatcaccttctctatatcatcatttactgacaaca |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54905258 |
ctcttaagctcttccattcggatcggtttcactagatagttgcaagcaccgtgtataacactcttcatcaccttctctatatcatcatttactgacaaca |
54905357 |
T |
|
| Q |
208 |
ctatatatcacacacaaaaaatcgtcacttagatactatctgaataaaagaagtgtatataaattaggtaaacaatacagattttaagacaaaggtgtgt |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||| |||||||| || | ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54905358 |
ctatatatcacacacaaaaaatcgtcacttagatacaatctgaatataagaagtggatcttaattaggtaaacaatacagattttaagacaaaggtgtgt |
54905457 |
T |
|
| Q |
308 |
gagcttactgatgaaaggtaaatccatttcaagtccagcttgctcaaggagcttgaagccatccatgtctggcatgctaacatcactaattactaggtca |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54905458 |
gagcttactgatgaaaggtaaatccatttcaagtccaacttgctcaaggagcttgaagccatccatgtctggcatgctaacatcactaattactaggtca |
54905557 |
T |
|
| Q |
408 |
aacatatcc |
416 |
Q |
| |
|
||||||||| |
|
|
| T |
54905558 |
aacatatcc |
54905566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 8 - 415
Target Start/End: Original strand, 54889108 - 54889516
Alignment:
| Q |
8 |
attttcagatgaggtgtcttgaccatataccccatcactaatgataccttgattttgatccttgctttcaatcttctttctaactacatgttgccatatg |
107 |
Q |
| |
|
||||||||||||||||||||||| | ||| ||||||| |||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
54889108 |
attttcagatgaggtgtcttgactacatatcccatcagtaatgatacctttattccgatccttgctttcaatcttctttctcactacatgttgccatatg |
54889207 |
T |
|
| Q |
108 |
ctcttaagctcttccattcggatcggtttcactagatagttgcaagcaccgtgtataacactcttcatcaccttctctatatcatcatttactgacaaca |
207 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||||||| |||||| || | || |||| ||||||||| ||||| ||||||||||| ||||||||| |
|
|
| T |
54889208 |
ttcttaagctcttccaatcggattggtttcactagatagtcgcaagcgcctttcatcacacctttcatcaccctctctctatcatcatttcctgacaaca |
54889307 |
T |
|
| Q |
208 |
ctatatatcacacacaaaaaatcgtcactt--agatactatctgaataaaagaagtgtatataaattaggtaaacaatacagattttaagacaaaggtgt |
305 |
Q |
| |
|
|||||| |||| | |||||||| |||||| ||| |||||||||||| |||||||| || | | |||| | || |||| | || ||| |||||||| | |
|
|
| T |
54889308 |
ctatatcacaca-aaaaaaaatcatcacttaaagacactatctgaatataagaagtgaatcttagttagctgaataataaacatgctaaaacaaaggtat |
54889406 |
T |
|
| Q |
306 |
gtgagcttactgatgaaaggtaaatccatttcaagtccagcttgctcaaggagcttgaagccatccatgtctggcatgctaacatcactaattactaggt |
405 |
Q |
| |
|
||||||||||||||||| |||| || |||||||||||| ||||||||||||||||||| |||||||| ||||||||||| |||||||||||||| |||| |
|
|
| T |
54889407 |
gtgagcttactgatgaagggtaggtctatttcaagtccaacttgctcaaggagcttgaatccatccatttctggcatgcttacatcactaattacaaggt |
54889506 |
T |
|
| Q |
406 |
caaacatatc |
415 |
Q |
| |
|
|||||||||| |
|
|
| T |
54889507 |
caaacatatc |
54889516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 8 - 412
Target Start/End: Original strand, 54894720 - 54895136
Alignment:
| Q |
8 |
attttcagatgaggtgtcttgaccatataccccatcactaatgataccttgattttgatccttgctttcaatcttctttctaactacatgttgccatatg |
107 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
54894720 |
attttcagatgaggtgtcttgaccagataccccatcactaatgataccttgattttgatccttgctttcaatcttttttctcactacatgttgccatatg |
54894819 |
T |
|
| Q |
108 |
ctcttaagctcttccattcggatcggtttcactagatagttgcaagcaccgtgtataacactcttcatcaccttctctatatcatcatttactgacaaca |
207 |
Q |
| |
|
|||||||||| |||| |||||||||||| |||||||||| |||||| || | || |||| ||||||||| | ||| ||||||||| | ||||||||| |
|
|
| T |
54894820 |
ttcttaagctcctccaatcggatcggtttgactagatagtcgcaagcgcctttcatcacacctttcatcaccctttctctatcatcatgtcctgacaaca |
54894919 |
T |
|
| Q |
208 |
ctatatatcac------acacaaaaaatcgtcactt--agatactatctgaataaaagaagtgtatataaattaggtaaacaatacagattttaagaca- |
298 |
Q |
| |
|
|||||| ||| | | |||||||| |||||| |||| |||| |||||| |||||||| || | |||||| | || |||||| || |||||||| |
|
|
| T |
54894920 |
ctatatcacaccaatagaaaaaaaaaatcatcacttaaagattctatatgaatataagaagtggatcttaattagctgaataatacacatgttaagacaa |
54895019 |
T |
|
| Q |
299 |
---aaggtgtgtgagcttactgatgaaaggtaaatccatttcaagtccagcttgctcaaggagcttgaagccatccatgtctggcatgctaacatcacta |
395 |
Q |
| |
|
||||| ||| |||||||| |||||||| | ||||| ||||||||| ||||||||||||||||||| |||||||| ||||||||| | ||||||||| |
|
|
| T |
54895020 |
tttaaggtttgttagcttactaatgaaaggcaggtccatctcaagtccaacttgctcaaggagcttgaaaccatccatttctggcatgtttacatcacta |
54895119 |
T |
|
| Q |
396 |
attactaggtcaaacat |
412 |
Q |
| |
|
|||| || |||||||| |
|
|
| T |
54895120 |
attataagatcaaacat |
54895136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 311 - 409
Target Start/End: Complemental strand, 2888631 - 2888533
Alignment:
| Q |
311 |
cttactgatgaaaggtaaatccatttcaagtccagcttgctcaaggagcttgaagccatccatgtctggcatgctaacatcactaattactaggtcaaa |
409 |
Q |
| |
|
|||||| |||| |||||||||||| ||||||||| | ||||||| ||||| || ||||||||||||||||| ||||| || |||||||||||||| |
|
|
| T |
2888631 |
cttacttatgacaggtaaatccatctcaagtccaacaagctcaagaagcttaaatccatccatgtctggcatatgaacattgctgattactaggtcaaa |
2888533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 311 - 409
Target Start/End: Complemental strand, 2904734 - 2904636
Alignment:
| Q |
311 |
cttactgatgaaaggtaaatccatttcaagtccagcttgctcaaggagcttgaagccatccatgtctggcatgctaacatcactaattactaggtcaaa |
409 |
Q |
| |
|
||||||||||| ||||| ||||| ||||||||| | ||||||| ||||| || ||||||||||||||||| ||||| || |||||||||||||| |
|
|
| T |
2904734 |
cttactgatgacaggtaggtccatctcaagtccaacaagctcaagaagcttaaatccatccatgtctggcatatgaacattgctgattactaggtcaaa |
2904636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 311 - 409
Target Start/End: Complemental strand, 2893226 - 2893128
Alignment:
| Q |
311 |
cttactgatgaaaggtaaatccatttcaagtccagcttgctcaaggagcttgaagccatccatgtctggcatgctaacatcactaattactaggtcaaa |
409 |
Q |
| |
|
||||||||||| ||||| ||||| ||||||||| | ||||||| ||||| || || |||||||||||||| ||||| || |||||||||||||| |
|
|
| T |
2893226 |
cttactgatgacaggtaggtccatctcaagtccaacaagctcaagaagcttaaatccgtccatgtctggcatatgaacattgctgattactaggtcaaa |
2893128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 330 - 409
Target Start/End: Original strand, 48870467 - 48870546
Alignment:
| Q |
330 |
tccatttcaagtccagcttgctcaaggagcttgaagccatccatgtctggcatgctaacatcactaattactaggtcaaa |
409 |
Q |
| |
|
||||| ||||||||| | ||||||| ||||| || ||||||||||||||||| ||||| ||| |||||||||||||| |
|
|
| T |
48870467 |
tccatctcaagtccaacaagctcaagaagcttaaatccatccatgtctggcatatgaacattactgattactaggtcaaa |
48870546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University