View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4826_low_1 (Length: 665)
Name: NF4826_low_1
Description: NF4826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4826_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 538; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 538; E-Value: 0
Query Start/End: Original strand, 6 - 558
Target Start/End: Original strand, 38568829 - 38569382
Alignment:
| Q |
6 |
catcatcatcatcatgtaactgaaaatttattctacaaattaaagaaaaatctcattcatcccataagtacagctcgtttggtatagctgcaaagatgtt |
105 |
Q |
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| T |
38568829 |
catcatcatcatcatgtaactgaaaatttattctacaaattaaagaaaaatctcattcatcccataagtacagctcgtttggtatagctgcaaagatgtt |
38568928 |
T |
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| Q |
106 |
gatatgcaggtgttcggacacgacactccctgatttaccacgctagactacgacaaaaagagaaatcattcattaacgaatataatttcgtagcatggtt |
205 |
Q |
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| T |
38568929 |
gatatgcaggtgttcggacacgacactccccgatttaccacgctagactacgacaaaaagagaaatcattcattaacgaatataatttcgtagcatggtt |
38569028 |
T |
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| Q |
206 |
ttatgttaccttggtcacttggtcaacaatgtcctcggtgttagtttggttactaccgaaactatgaatcatttgaccgaggagcactgtcatgataggt |
305 |
Q |
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| T |
38569029 |
ttatgttaccttggtcacttggtcaacaatgtcctcggtgttagtttggttactaccgaaactatgaatcatttgaccgaggagcactgtcatgataggt |
38569128 |
T |
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| Q |
306 |
aaacccaaaccatttccaatagcaccaatagtaccaacaatcattaacagaatgtcagtggaatctgcaaaagagaataatttgtgaaatggtactgtct |
405 |
Q |
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| T |
38569129 |
aaacccaaaccatttccaatagcaccaatagtaccaacaatcattaacagaatgtcagtggaatctgcaaaagagaataatttgtgaaatggtactgtct |
38569228 |
T |
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| Q |
406 |
cttgtttttcttttgttatgtccttttcgccgtttgtagtagcatttgtacttgtttctgtacgattattctctgacgttgttgcttcatcaacaacatc |
505 |
Q |
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| T |
38569229 |
cttgtttttcttttgttatgtccttttcgccgtttgtagtagcatttgtacttgtttctgtacgattattctctgacgttgttgcttcatcaacaaaatc |
38569328 |
T |
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| Q |
506 |
attctcaatctccacacccatctc-aaatcactgtcacttgttttaaactatgg |
558 |
Q |
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| T |
38569329 |
attctcaatctccacacccatctcaaaatcactgtcacttgttttaaactatgg |
38569382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 205 - 497
Target Start/End: Original strand, 38527615 - 38527910
Alignment:
| Q |
205 |
tttatgttaccttggtcacttggtcaacaatgtcctcggtgttagtttggttactaccgaaactatgaatcatttgaccgaggagcactgtcatgatagg |
304 |
Q |
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| T |
38527615 |
tttatgataccttggacacttgttctacaacatcggtggtgttactttggttactaccaaaactatcaatcatttgaccgaacaataatgtcataagagg |
38527714 |
T |
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| Q |
305 |
taaacccaaaccatttccaatagcaccaatagtaccaacaatcattaacagaatgtcagtggaatctgcaaaagagaataatttgtgaaatggtactgtc |
404 |
Q |
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| T |
38527715 |
taaacccaaaccgtttccaatagcaccgatagtaccaacaatcattaataaaatgtcagtagaatctgcaaaagtgaatagtttgtgaaatggaactgtc |
38527814 |
T |
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| Q |
405 |
tcttgtttttcttttgttatgtccttttcgccgtttgtagtagcatttg---tacttgtttctgtacgattattctctgacgttgttgcttcatca |
497 |
Q |
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| T |
38527815 |
tcttgtttttcttttgttttgtccttttcgccgtttgtaacaacatttgtactacttgtttctgttgaatttttctctgacgttgttgcttcatca |
38527910 |
T |
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