View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4827-Insertion-1 (Length: 724)
Name: NF4827-Insertion-1
Description: NF4827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4827-Insertion-1 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 610; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 610; E-Value: 0
Query Start/End: Original strand, 8 - 724
Target Start/End: Original strand, 54861903 - 54862622
Alignment:
| Q |
8 |
atatcgacatgcttctctataggcatagccatggaaagacgcaatcttatatgatatgattgacagttgacagcgttgctcattttaatgatttatgtga |
107 |
Q |
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| T |
54861903 |
atatcgacatgcttctctataggcatagccatggaaagacgcaatcttatatgatatgattgatagttgacagcgttgctcattttaatgatttatgtga |
54862002 |
T |
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| Q |
108 |
aatagactgcagagttttcctataaatttttctgctaaataaaaggaagaatcgatttattgatgtttatattttgtttggtattgtaggtggatactaa |
207 |
Q |
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| T |
54862003 |
aatagactgcagagttttcctataaatttttctgctaaataaaaggaagaatcgatttattgatgtttatattttgtttggtattgtaggtggatactaa |
54862102 |
T |
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| Q |
208 |
acgccgtcaaagatgaaagtgatggtgtattagatatataatggatgggaccctagtttttcaaatccttggtaggagcagaataaactcttgacaatgg |
307 |
Q |
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| T |
54862103 |
acgccgtcaaagatgaaagtgatggtgtattagatatataatggacgggactctggtttttcaaatccttggtaggagcagaataaactc-tgacaatgg |
54862201 |
T |
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| Q |
308 |
tctgaaagtttgtcaatggttggagtaatcatcactgtttccctaggtagtgaaggatgtgtttctttttgttatctgcaatcattttgtgatgtagatt |
407 |
Q |
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| T |
54862202 |
tctgaaagtttgtcaatggttggagtaatcatcactgtttccctaggtagtggaggatgtgtttctttttgttatctgtaattattttgtgatgtagatt |
54862301 |
T |
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| Q |
408 |
ctccatatatcctcatcgggtccttgttcatactcagacttttgtcaagtagcttgacttgtttacaactacaaccagtatatacattaagactttctat |
507 |
Q |
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| T |
54862302 |
ctccatatatcctcatcgggtccttgttcatactcagacttttgtcaagtagcttgacttgtttacaactacaaccagtatacacattaagactttctat |
54862401 |
T |
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| Q |
508 |
tctccggtgacaaaattgttgttagtc----annnnnnnnnngggttaacatgatattattatgaaattttaccaccgtttaacggtgattaatctccgt |
603 |
Q |
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| T |
54862402 |
tctccggtgacaaaattgttgttagtcgttttttttttttttgggttaacatgatattagtatgaaattttaccaccgtttaacggtgattaatctccgt |
54862501 |
T |
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| Q |
604 |
ctgggaacttgtgggacacacaaggtgggttcttgtttctcaactgaattttttccatatgtccacaaatcccataccacttgaatcaatctattattag |
703 |
Q |
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| T |
54862502 |
ctgggaacttgtggggcacacaagatgggttcttgcttctcaactgaattttttccatatgtccacaaatcccttaccacttgaatcaatctattattag |
54862601 |
T |
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| Q |
704 |
ttgttgttagtcgtatttcta |
724 |
Q |
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| T |
54862602 |
ttgttgttagtcgtatttcta |
54862622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 312 - 472
Target Start/End: Original strand, 54857374 - 54857537
Alignment:
| Q |
312 |
aaagtttgtcaatggttggagtaatcatcactgtttccctaggtagtgaaggatgtgtttctttttgttatctgcaatcatttt---gtgatgtagattc |
408 |
Q |
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| T |
54857374 |
aaagtttgtcgatggtttgagtatccatcccagtttcccttggaagtggaggatgtgtttctttta-ttatatgtaattattattatgtgatgtagtttc |
54857472 |
T |
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| Q |
409 |
tccatata-tcctcatcgggtccttgttcatactcagacttttgtcaagtagcttgacttgttta |
472 |
Q |
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| T |
54857473 |
tccatctaatccccatcgggtccttgttcatactcagacttttgtgaattagcttgacttattta |
54857537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 174 - 213
Target Start/End: Original strand, 54857160 - 54857199
Alignment:
| Q |
174 |
ttatattttgtttggtattgtaggtggatactaaacgccg |
213 |
Q |
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| T |
54857160 |
ttatattttgtttggtattgtaggtggatactaaacgccg |
54857199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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