View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4827-Insertion-11 (Length: 61)

Name: NF4827-Insertion-11
Description: NF4827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4827-Insertion-11
NF4827-Insertion-11
[»] chr3 (1 HSPs)
chr3 (7-60)||(21588993-21589046)
[»] chr8 (2 HSPs)
chr8 (28-60)||(27681681-27681713)
chr8 (30-60)||(37207780-37207810)
[»] chr6 (1 HSPs)
chr6 (30-60)||(23425552-23425582)
[»] chr4 (4 HSPs)
chr4 (30-60)||(912905-912935)
chr4 (30-60)||(12430941-12430971)
chr4 (30-60)||(29331710-29331740)
chr4 (30-60)||(42409177-42409207)
[»] chr1 (2 HSPs)
chr1 (30-60)||(28517344-28517374)
chr1 (30-60)||(38989170-38989200)


Alignment Details
Target: chr3 (Bit Score: 54; Significance: 8e-23; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 8e-23
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 21588993 - 21589046
Alignment:
Q  7 atcgtcaatgttgaatacttccagttccattgtattccattagtgacctaattt 60  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21588993 atcgtcaatgttgaatacttccagttccattgtattccattagtgacctaattt 21589046  T

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Target: chr8 (Bit Score: 29; Significance: 0.00000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.00000006
Query Start/End: Original strand, 28 - 60
Target Start/End: Original strand, 27681681 - 27681713
Alignment:
Q  28 cagttccattgtattccattagtgacctaattt 60  Q
    |||||||||||||||||||||||||| ||||||    
T  27681681 cagttccattgtattccattagtgacataattt 27681713  T

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Target: chr8; HSP #2
Raw Score: 27; E-Value: 0.000001
Query Start/End: Original strand, 30 - 60
Target Start/End: Complemental strand, 37207810 - 37207780
Alignment:
Q  30 gttccattgtattccattagtgacctaattt 60  Q
    |||||||||||||||||||||||| ||||||    
T  37207810 gttccattgtattccattagtgacataattt 37207780  T

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Target: chr6 (Bit Score: 27; Significance: 0.000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 27; E-Value: 0.000001
Query Start/End: Original strand, 30 - 60
Target Start/End: Complemental strand, 23425582 - 23425552
Alignment:
Q  30 gttccattgtattccattagtgacctaattt 60  Q
    |||||||||||||||||||||||| ||||||    
T  23425582 gttccattgtattccattagtgacataattt 23425552  T

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Target: chr4 (Bit Score: 27; Significance: 0.000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 27; E-Value: 0.000001
Query Start/End: Original strand, 30 - 60
Target Start/End: Original strand, 912905 - 912935
Alignment:
Q  30 gttccattgtattccattagtgacctaattt 60  Q
    |||||||||||||||||||||||| ||||||    
T  912905 gttccattgtattccattagtgacataattt 912935  T

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Target: chr4; HSP #2
Raw Score: 27; E-Value: 0.000001
Query Start/End: Original strand, 30 - 60
Target Start/End: Original strand, 12430941 - 12430971
Alignment:
Q  30 gttccattgtattccattagtgacctaattt 60  Q
    |||||||||||||||||||||||| ||||||    
T  12430941 gttccattgtattccattagtgacataattt 12430971  T

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Target: chr4; HSP #3
Raw Score: 27; E-Value: 0.000001
Query Start/End: Original strand, 30 - 60
Target Start/End: Complemental strand, 29331740 - 29331710
Alignment:
Q  30 gttccattgtattccattagtgacctaattt 60  Q
    |||||||||||||||||||||||| ||||||    
T  29331740 gttccattgtattccattagtgacataattt 29331710  T

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Target: chr4; HSP #4
Raw Score: 27; E-Value: 0.000001
Query Start/End: Original strand, 30 - 60
Target Start/End: Complemental strand, 42409207 - 42409177
Alignment:
Q  30 gttccattgtattccattagtgacctaattt 60  Q
    |||||||||||||||||||||||| ||||||    
T  42409207 gttccattgtattccattagtgacataattt 42409177  T

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Target: chr1 (Bit Score: 27; Significance: 0.000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 27; E-Value: 0.000001
Query Start/End: Original strand, 30 - 60
Target Start/End: Complemental strand, 28517374 - 28517344
Alignment:
Q  30 gttccattgtattccattagtgacctaattt 60  Q
    |||||||||||||||||||||||| ||||||    
T  28517374 gttccattgtattccattagtgacataattt 28517344  T

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Target: chr1; HSP #2
Raw Score: 27; E-Value: 0.000001
Query Start/End: Original strand, 30 - 60
Target Start/End: Complemental strand, 38989200 - 38989170
Alignment:
Q  30 gttccattgtattccattagtgacctaattt 60  Q
    |||||||||||||||||||||||| ||||||    
T  38989200 gttccattgtattccattagtgacataattt 38989170  T

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