View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4827-Insertion-3 (Length: 585)
Name: NF4827-Insertion-3
Description: NF4827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4827-Insertion-3 |
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Alignment Details
Target: chr1 (Bit Score: 438; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 8 - 562
Target Start/End: Original strand, 48413301 - 48413836
Alignment:
| Q |
8 |
gaatcgtcaatacaccgtgcaaggtctggggcgcaaaccaaaagaagcgttcggcagagcacaacggcagactcctcagattctgagtaacttgtatttc |
107 |
Q |
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| T |
48413301 |
gaatcgtcaatacaccgtgcaaggtccggggcgcaaaccaaaagaagtgttcggcagagcacaacggcagactcctcagattctgagtaacttgtatttc |
48413400 |
T |
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| Q |
108 |
ctgttgagtttcatttatgttgccctcctggaaagacaagagctcagatcactgcctaaattttgtttttgttggccgtttgtgtgtctttctaaattta |
207 |
Q |
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|||||||||||||||||| ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48413401 |
ctgttgagtttcatttatattgccctcctg-aaagacgagagctcagatcactgcctaaattttgtttttgttggccgtttgtgtgtctttctaaattta |
48413499 |
T |
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| Q |
208 |
gtttggttggccacttgtgtgtcttgtaagttt-tatcgtagtttatagatctagtgctactatcaattgccagtcttgtttggattatcgtgatgtttg |
306 |
Q |
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| T |
48413500 |
gtttggttggccacttgtgtgtcttgtaagtttctatcgtagtttatagatc-------------------cagtctagtttggattatcgtgatgtttg |
48413580 |
T |
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| Q |
307 |
taccaatgataccaatcactataagtaatactaagagttttgagatagacacacgtagcctttaatttgtttgtcctttgcaaatgtgctaataccaaga |
406 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48413581 |
taccaatgatactaatcactataagtaatactaagagttttgagatagacacacgtagcctttaatttgtttgtcctttgcaaatgtgctaataccaaga |
48413680 |
T |
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| Q |
407 |
attacttttatacagtataatgtttcctgtagtcatgaagcaaatgttgtgctaatgataaaatatttatctcgatcgcaacctcttccgtgtagtatct |
506 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
48413681 |
attacttttaggcagtataatgtttcctgtagtcatgaagcaaatgttgtgctaatgataaaatatttatctctatcgcaacctcttccgtgtagtatct |
48413780 |
T |
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| Q |
507 |
aatgaaaaataaatatctacgctgtgggtgaaaaacgtttgtgtctgaaaacagca |
562 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
48413781 |
aatgaaaaataaatatctacgctgtgggtgaaaaacgtttgtgtctgaaaaaagca |
48413836 |
T |
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