View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4827-Insertion-4 (Length: 567)

Name: NF4827-Insertion-4
Description: NF4827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4827-Insertion-4
NF4827-Insertion-4
[»] scaffold0620 (2 HSPs)
scaffold0620 (108-567)||(1142-1602)
scaffold0620 (7-70)||(1076-1139)
[»] chr6 (3 HSPs)
chr6 (108-567)||(34087689-34088149)
chr6 (7-70)||(34087623-34087686)
chr6 (460-521)||(34095372-34095433)


Alignment Details
Target: scaffold0620 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: scaffold0620
Description:

Target: scaffold0620; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 108 - 567
Target Start/End: Original strand, 1142 - 1602
Alignment:
Q  108 acatattgatttggctcataacataaaaaattgaataatacataattcaagttcaactcatttattaacgagattatttgtcaacttagattagactaat 207  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||| |||| ||||||||||    
T  1142 acatattgatttggctcataacataaaaaattgaataatgcataattcaagttcaactcatttattaacgagtttattggtcaatttaggttagactaat 1241  T
Q  208 ttgatgaatcacgtttaacaaattagttactaaatcaaatcttgagatatttttgagttggttcggatcattattaaccatacaaaaaatcaatgtttga 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  1242 ttgatgaatcacgtttaacaaattagttactaaatcaaatcttgagatatttttgagttggttcggatcattattaaccatacaaaaaatcaatgtttaa 1341  T
Q  308 aaaccatacccgtcattaatccaataaagacaattgttttagttacaattgtgattgaaccagaattgaacagatagtcagtgaggacacaaatcaacat 407  Q
    || ||||||| ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  1342 aatccataccagtcattaatccaataaagacaatcgttttagttacaattgtggttgaaccagaattgaacagatagtcactgaggacacaaatcaacat 1441  T
Q  408 gatactatcttttaa-nnnnnnnnataagcaagaaattttattaaatgggagcacaaaaggtactctatctcattaaaacatctagtgtttaacacttaa 506  Q
    |||||||||||||||         |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  1442 gatactatcttttaatttttttttataagcaataaattttataaaatgggagcacaaaaggtactctatctcattaaaacatccggtgtttaacacttaa 1541  T
Q  507 catgaaatacaaagtaatgggcatgagtacctttgtaatgtaggaaacacatgaacaaagt 567  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  1542 catgaaatacaaagtaatgggcatgaatacctttgtaatgtaggaaacacatgaacaaagt 1602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0620; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 7 - 70
Target Start/End: Original strand, 1076 - 1139
Alignment:
Q  7 agaaacatcaatgaacatactttaaagcctttgaaatttgcatgagaataaatcattcttttta 70  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  1076 agaaacatcaatgaacatactttaaaacctttgaaatttgcatgagaataaatcattcttttta 1139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 365; Significance: 0; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 108 - 567
Target Start/End: Original strand, 34087689 - 34088149
Alignment:
Q  108 acatattgatttggctcataacataaaaaattgaataatacataattcaagttcaactcatttattaacgagattatttgtcaacttagattagactaat 207  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||| |||| ||||||||||    
T  34087689 acatattgatttggctcataacataaaaaattgaataatgcataattcaagttcaactcatttattaacgagtttattggtcaatttaggttagactaat 34087788  T
Q  208 ttgatgaatcacgtttaacaaattagttactaaatcaaatcttgagatatttttgagttggttcggatcattattaaccatacaaaaaatcaatgtttga 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  34087789 ttgatgaatcacgtttaacaaattagttactaaatcaaatcttgagatatttttgagttggttcggatcattattaaccatacaaaaaatcaatgtttaa 34087888  T
Q  308 aaaccatacccgtcattaatccaataaagacaattgttttagttacaattgtgattgaaccagaattgaacagatagtcagtgaggacacaaatcaacat 407  Q
    || ||||||| ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  34087889 aatccataccagtcattaatccaataaagacaatcgttttagttacaattgtggttgaaccagaattgaacagatagtcactgaggacacaaatcaacat 34087988  T
Q  408 gatactatcttttaa-nnnnnnnnataagcaagaaattttattaaatgggagcacaaaaggtactctatctcattaaaacatctagtgtttaacacttaa 506  Q
    |||||||||||||||         |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  34087989 gatactatcttttaatttttttttataagcaataaattttataaaatgggagcacaaaaggtactctatctcattaaaacatccggtgtttaacacttaa 34088088  T
Q  507 catgaaatacaaagtaatgggcatgagtacctttgtaatgtaggaaacacatgaacaaagt 567  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  34088089 catgaaatacaaagtaatgggcatgaatacctttgtaatgtaggaaacacatgaacaaagt 34088149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 7 - 70
Target Start/End: Original strand, 34087623 - 34087686
Alignment:
Q  7 agaaacatcaatgaacatactttaaagcctttgaaatttgcatgagaataaatcattcttttta 70  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  34087623 agaaacatcaatgaacatactttaaaacctttgaaatttgcatgagaataaatcattcttttta 34087686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 460 - 521
Target Start/End: Original strand, 34095372 - 34095433
Alignment:
Q  460 acaaaaggtactctatctcattaaaacatctagtgtttaacacttaacatgaaatacaaagt 521  Q
    |||| |||||||||||  ||||||||||| ||||||||||||||||||||||||||||||||    
T  34095372 acaagaggtactctattccattaaaacatatagtgtttaacacttaacatgaaatacaaagt 34095433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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