View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4827-Insertion-5 (Length: 550)
Name: NF4827-Insertion-5
Description: NF4827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4827-Insertion-5 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 437; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 8 - 550
Target Start/End: Original strand, 52546013 - 52546539
Alignment:
| Q |
8 |
taataaatatttcatcagaagatgtctatagtgcaccaatttggatttgctgtggttaaatatccacgtattcaagtagtcagagatgtcagtggctgtt |
107 |
Q |
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| T |
52546013 |
taataaatatttcatcagaagatgtctatagtgcaccaatttggatttgctgtggttaaatatccacgtattcaagtagtcagagatgtcggtggctgtt |
52546112 |
T |
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| Q |
108 |
ggattgagattggatgatctaaattttaatacatattttgattattttnnnnnnnctgaaatactgaactcaatctcgagccaacggctactgacgtccc |
207 |
Q |
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| T |
52546113 |
ggattgagattggatgatctaaattttaatacatattttgattattttaaaaaaactgaaatactgaactcgatctcgagccaacggctactgacgtccc |
52546212 |
T |
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| Q |
208 |
tccctaactgtgtgaatgcgaagactatgactgcaacaaatcgatattgtacaagttcaagctgataatttattagtttgttattggaatgaagaaaata |
307 |
Q |
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| T |
52546213 |
tccctaactgtgtgaatgcgaagactatgactgcaacaaatcgatattgtacaagttctagctgataatttattagtttgttattgaaatggagaaaata |
52546312 |
T |
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| Q |
308 |
actaagtgagaattgacagtaattgaaatggtaaatataccctttgaggagcatcatatgatttgtgagcatgacaagttccttctcgaaaatttccaca |
407 |
Q |
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| T |
52546313 |
actaagtgagaattgacagtaattgaaatggtaaatataccctttgaggagcatcatatgatttgtgagcatgacaagttccttctcgaaagtttcgaca |
52546412 |
T |
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| Q |
408 |
agtaccttgtggcaatccatagctagcaaatttaatttgggtgatcttttgtccaatgggacaccacaagtcagctagtctattaacttggttactaagt |
507 |
Q |
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| T |
52546413 |
agtaccttgtggcaatccatagctagcaaatttaatttgggtgatcttttgtccaatgggacaccgcaagtcagctag----------------ctaagt |
52546496 |
T |
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| Q |
508 |
gttggctgattttcatatatgtcagcacacacacttcctgttg |
550 |
Q |
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| T |
52546497 |
gttggctgattttcatatatgtcagcacacacacttcctgttg |
52546539 |
T |
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Back To:
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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 105 - 155
Target Start/End: Original strand, 37846405 - 37846455
Alignment:
| Q |
105 |
gttggattgagattggatgatctaaattttaatacatattttgattatttt |
155 |
Q |
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| T |
37846405 |
gttggattgagattcgaagatctaatttttaatacatattttgattttttt |
37846455 |
T |
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