View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4827-Insertion-6 (Length: 519)
Name: NF4827-Insertion-6
Description: NF4827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4827-Insertion-6 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 211 - 519
Target Start/End: Complemental strand, 1464929 - 1464628
Alignment:
| Q |
211 |
ttcttgttagatactaatatcctatctaagcttagatgagaaagagaaaaaaccaataaaatagcttaggtctctgagtctttcttcgtcattattaata |
310 |
Q |
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| T |
1464929 |
ttcttgttagatactaatatcttatctaagcttagatgagaaagagaaaaaaccaataaaatagcttaggtctctgagtctttcttcgtcattattaata |
1464830 |
T |
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| Q |
311 |
tttttcctgagaaaaatattgaactaattcttcaagattgttcaggctttgcctaaattgaataattagtattaagtgtgtcaatgtcgaggcccttcag |
410 |
Q |
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| T |
1464829 |
tttttcctgagaaaaatattgaaccaattcttcaagattgtgcagcctttgcctaaattgaataattagtattaagtgtgtcaatgtcgaggcccttcag |
1464730 |
T |
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| Q |
411 |
cttcactaccgactcaacacgacccttaagagtattccgctccataagcctgaaacacgtccattcattaaacattgaatcagtcgcaaataaacattac |
510 |
Q |
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| T |
1464729 |
cttcactaccgactcaacacgacccttaagagtattccgctccataagcctgaaacacgtccat-------acattgaatcagtcgcaaataaacattac |
1464637 |
T |
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| Q |
511 |
atacgacac |
519 |
Q |
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| T |
1464636 |
atacgacac |
1464628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 7 - 109
Target Start/End: Complemental strand, 1465136 - 1465034
Alignment:
| Q |
7 |
agaaagaaaagggatggaaagacatgaaaaaacaaggtttgatatagaaaatctaaaatgtaaagatcttatgttaacaacttaatcctattaattttca |
106 |
Q |
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| T |
1465136 |
agaaagaaaagggatggaaagacatgaaaaaacaaggtttgatatagaaaatctaaaatgtaaagatcttatgttaacaacttgatcctattaattttca |
1465037 |
T |
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| Q |
107 |
ata |
109 |
Q |
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| T |
1465036 |
ata |
1465034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 19 - 109
Target Start/End: Complemental strand, 26792767 - 26792673
Alignment:
| Q |
19 |
gatggaaagaca-tgaaaaaacaaggtttgatatagaaaatct-aaaatgtaaagatct--tatgttaacaacttaatcctattaattttcaata |
109 |
Q |
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| T |
26792767 |
gatggaaagacaatgaaaaaacaaggtttgatataggaaatctaaaaatgtaaagatcttatatgttaacaacttaatgctgtaaattttcaata |
26792673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 336 - 498
Target Start/End: Complemental strand, 26792455 - 26792297
Alignment:
| Q |
336 |
aattcttcaagattgttcaggctttgcctaaattgaataattagtattaagtgtgtcaatgtcgaggcccttcagcttcactaccgactcaacacgaccc |
435 |
Q |
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| T |
26792455 |
aattcttgaagattgttcaagcttttcctatattgtataattctgcttaattgtctcaatgtcaagtccg---agcttcaccactgactcaacacggccc |
26792359 |
T |
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| Q |
436 |
ttaagagtattccgctccataagcctgaaacacgtccattcattaaacattgaatcagtcgca |
498 |
Q |
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| T |
26792358 |
tttagagtattcttctccataagcctgtaacacatccattcatt-aactatgaatcagtcgca |
26792297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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