View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4827-Insertion-7 (Length: 488)

Name: NF4827-Insertion-7
Description: NF4827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4827-Insertion-7
NF4827-Insertion-7
[»] chr5 (3 HSPs)
chr5 (8-488)||(8758217-8758700)
chr5 (85-152)||(35732279-35732348)
chr5 (114-154)||(18345817-18345857)
[»] chr4 (2 HSPs)
chr4 (87-154)||(9521820-9521889)
chr4 (101-153)||(37951651-37951703)
[»] chr1 (3 HSPs)
chr1 (107-155)||(8296289-8296337)
chr1 (110-155)||(18280395-18280440)
chr1 (106-159)||(27829942-27829995)
[»] chr7 (6 HSPs)
chr7 (102-154)||(25583995-25584047)
chr7 (85-154)||(37757424-37757495)
chr7 (85-154)||(37763172-37763243)
chr7 (85-154)||(38603095-38603166)
chr7 (110-148)||(34383265-34383303)
chr7 (89-151)||(30969844-30969908)
[»] chr3 (1 HSPs)
chr3 (78-154)||(26868897-26868971)
[»] chr8 (2 HSPs)
chr8 (85-155)||(39421601-39421673)
chr8 (89-146)||(9824458-9824517)


Alignment Details
Target: chr5 (Bit Score: 441; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 8 - 488
Target Start/End: Original strand, 8758217 - 8758700
Alignment:
Q  8 taaattgtaaagtgagaaattttgaagttgttatttcaacaaactcgtgattcgata--acgtacatgtaaaacccacatttgatttgttaattaagttg 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  ||||||||||||||||||||||||||||||||||| |||||    
T  8758217 taaattgtaaagtgagaaattttgaagttgttatttcaacaaactcgtgattcaatataacgtacatgtaaaacccacatttgatttgttaattcagttg 8758316  T
Q  106 ataatactcactttacactctaatgtgagttgttcactttagaggagccaaatcagtatacaatcaatttacttcttcagttgtgcagactcattttcaa 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  8758317 ataatactcactttacactctaatgtgagttgttcactttagaggagccaaatcagtatacaatcaatttactttttcagttgtgcagactcattttcaa 8758416  T
Q  206 ctgtctagtgaattgttttcttaacctaaatgttatacaacccttccctttctttgcaactagtgttccatataagtctatgtcaagttaagatttaaac 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  8758417 ctgtctagtgaattgttttcttaacctaaatgttatacaacccttccctttctttgcaactagtgttccatataagtctatgtcaagtttagatttaaac 8758516  T
Q  306 ttaccctaaaaacttggcaaaaatgaccatttaac-tttttatcttatgagaacactttaaagtgttggcgtcaaagtatatagtaaggtgtagcagact 404  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||    
T  8758517 ttaccctaaaaacttggcaaaaatgaccatttaacttttttatcttatgagaacaatgtaaagtgttggcgtcaaagtatatagtaaggtgtagcagact 8758616  T
Q  405 ttgctgtatacaattatctacaactcttatgcgttggaccagatagaaaaatcctaaaaacaatactttgaatgattcctcaga 488  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8758617 ttgctgtatacaattatctacaactcttatgcgttggaccagatagaaaaatcctaaaaacaatactttgaatgattcctcaga 8758700  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 85 - 152
Target Start/End: Complemental strand, 35732348 - 35732279
Alignment:
Q  85 tttgatttgttaattaa--gttgataatactcactttacactctaatgtgagttgttcactttagaggag 152  Q
    |||||||||||| ||||  || |||| || |||||||||||||||| ||||||||||||||||| |||||    
T  35732348 tttgatttgttatttaacggtcgatattagtcactttacactctaaagtgagttgttcactttaaaggag 35732279  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 114 - 154
Target Start/End: Original strand, 18345817 - 18345857
Alignment:
Q  114 cactttacactctaatgtgagttgttcactttagaggagcc 154  Q
    ||||||||||||||| |||| ||| ||||||||||||||||    
T  18345817 cactttacactctaaagtgaattgctcactttagaggagcc 18345857  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 87 - 154
Target Start/End: Complemental strand, 9521889 - 9521820
Alignment:
Q  87 tgatttgttaattaa--gttgataatactcactttacactctaatgtgagttgttcactttagaggagcc 154  Q
    |||||||||||||||  ||||||| ||||||||||||||||||| |||| || |||||||||||||||||    
T  9521889 tgatttgttaattaatggttgatattactcactttacactctaaagtgaattattcactttagaggagcc 9521820  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 101 - 153
Target Start/End: Original strand, 37951651 - 37951703
Alignment:
Q  101 agttgataatactcactttacactctaatgtgagttgttcactttagaggagc 153  Q
    |||||||| |||||||||||| |||||| | |||||| |||||||||| ||||    
T  37951651 agttgatattactcactttactctctaaagcgagttgctcactttagatgagc 37951703  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 107 - 155
Target Start/End: Original strand, 8296289 - 8296337
Alignment:
Q  107 taatactcactttacactctaatgtgagttgttcactttagaggagcca 155  Q
    |||||||||||||||||||||| |||||||| |||||||||||||||||    
T  8296289 taatactcactttacactctaaagtgagttgctcactttagaggagcca 8296337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 110 - 155
Target Start/End: Complemental strand, 18280440 - 18280395
Alignment:
Q  110 tactcactttacactctaatgtgagttgttcactttagaggagcca 155  Q
    ||||||||||||||||||| |||||||| |||||||||||||||||    
T  18280440 tactcactttacactctaaagtgagttgctcactttagaggagcca 18280395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 159
Target Start/End: Complemental strand, 27829995 - 27829942
Alignment:
Q  106 ataatactcactttacactctaatgtgagttgttcactttagaggagccaaatc 159  Q
    |||||||||||| ||| |||||| |||| |||||||||||| ||||| ||||||    
T  27829995 ataatactcactatactctctaaagtgaattgttcactttacaggagtcaaatc 27829942  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 102 - 154
Target Start/End: Complemental strand, 25584047 - 25583995
Alignment:
Q  102 gttgataatactcactttacactctaatgtgagttgttcactttagaggagcc 154  Q
    ||||||| ||||||||||||||||||| |||||||| |||||||||| |||||    
T  25584047 gttgatattactcactttacactctaaagtgagttgctcactttagaagagcc 25583995  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 85 - 154
Target Start/End: Complemental strand, 37757495 - 37757424
Alignment:
Q  85 tttgatttgttaattaag--ttgataatactcactttacactctaatgtgagttgttcactttagaggagcc 154  Q
    |||||||| ||||||||   |||||| || |||||||||||||||| |||||||| ||| ||||||||||||    
T  37757495 tttgattttttaattaacgattgatattattcactttacactctaaagtgagttgctcattttagaggagcc 37757424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 85 - 154
Target Start/End: Complemental strand, 37763243 - 37763172
Alignment:
Q  85 tttgatttgttaattaag--ttgataatactcactttacactctaatgtgagttgttcactttagaggagcc 154  Q
    |||||||| ||||||||   |||||| || |||||||||||||||| |||||||| ||| ||||||||||||    
T  37763243 tttgattttttaattaacgattgatattattcactttacactctaaagtgagttgctcattttagaggagcc 37763172  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 85 - 154
Target Start/End: Original strand, 38603095 - 38603166
Alignment:
Q  85 tttgatttgttaattaa--gttgataatactcactttacactctaatgtgagttgttcactttagaggagcc 154  Q
    |||||||| ||||||||  ||||||| || |||||||||||||||| |||||||| ||| |||| |||||||    
T  38603095 tttgattttttaattaacggttgatattattcactttacactctaaagtgagttgctcattttaaaggagcc 38603166  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 110 - 148
Target Start/End: Complemental strand, 34383303 - 34383265
Alignment:
Q  110 tactcactttacactctaatgtgagttgttcactttaga 148  Q
    ||||||||||| ||||||| |||||||||||||||||||    
T  34383303 tactcactttagactctaaagtgagttgttcactttaga 34383265  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 151
Target Start/End: Original strand, 30969844 - 30969908
Alignment:
Q  89 atttgttaattaa--gttgataatactcactttacactctaatgtgagttgttcactttagagga 151  Q
    |||||||||||||  ||||||| | | ||||||||||||||| || ||||| |||||||||||||    
T  30969844 atttgttaattaacggttgatattgcgcactttacactctaaagttagttgctcactttagagga 30969908  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 78 - 154
Target Start/End: Original strand, 26868897 - 26868971
Alignment:
Q  78 acccacatttgatttgttaattaagttgataatactcactttacactctaatgtgagttgttcactttagaggagcc 154  Q
    |||||| |||||||| ||||| ||  |||||||||||| |||||| ||||| |||||||| || |||||||||||||    
T  26868897 acccacctttgatttcttaatcaa--tgataatactcattttacattctaaagtgagttgctcgctttagaggagcc 26868971  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 155
Target Start/End: Original strand, 39421601 - 39421673
Alignment:
Q  85 tttgatttgttaattaa--gttgataatactcactttacactctaatgtgagttgttcactttagaggagcca 155  Q
    |||||||||||||| ||  ||||||| ||||||||||| ||| ||| |||  ||| |||||||||||||||||    
T  39421601 tttgatttgttaatcaatggttgatattactcactttatactttaaagtggattgctcactttagaggagcca 39421673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 89 - 146
Target Start/End: Complemental strand, 9824517 - 9824458
Alignment:
Q  89 atttgttaattaa--gttgataatactcactttacactctaatgtgagttgttcacttta 146  Q
    |||||||||||||  ||||||| | || |||||||||||||| |||||||||| ||||||    
T  9824517 atttgttaattaatagttgatattgcttactttacactctaaagtgagttgtttacttta 9824458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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